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elastix::NormalizedMutualInformationMetric< TElastix > Class Template Reference

#include <elxNormalizedMutualInformationMetric.h>

Inheritance diagram for elastix::NormalizedMutualInformationMetric< TElastix >:
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Collaboration diagram for elastix::NormalizedMutualInformationMetric< TElastix >:
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Public Types

typedef
Superclass2::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass2::ConfigurationType 
ConfigurationType
typedef SmartPointer< const SelfConstPointer
typedef
Superclass1::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass1::DerivativeType DerivativeType
typedef Superclass2::ElastixPointer ElastixPointer
typedef Superclass2::ElastixType ElastixType
typedef
Superclass1::FixedImageConstPointer 
FixedImageConstPointer
typedef
Superclass1::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
typedef
Superclass1::FixedImageLimiterType 
FixedImageLimiterType
typedef
Superclass1::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass1::FixedImageMaskType 
FixedImageMaskType
typedef
Superclass1::FixedImagePixelType 
FixedImagePixelType
typedef
Superclass1::FixedImageRegionType 
FixedImageRegionType
typedef Superclass1::FixedImageType FixedImageType
typedef
Superclass1::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass1::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass1::GradientImagePointer 
GradientImagePointer
typedef
Superclass1::GradientImageType 
GradientImageType
typedef
Superclass1::GradientPixelType 
GradientPixelType
typedef
Superclass1::ImageSampleContainerPointer 
ImageSampleContainerPointer
typedef
Superclass1::ImageSampleContainerType 
ImageSampleContainerType
typedef
Superclass1::ImageSamplerPointer 
ImageSamplerPointer
typedef
Superclass1::ImageSamplerType 
ImageSamplerType
typedef Superclass1::InputPointType InputPointType
typedef
Superclass1::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass1::InterpolatorType 
InterpolatorType
typedef Superclass2::ITKBaseType ITKBaseType
typedef Superclass1::MeasureType MeasureType
typedef
Superclass1::MovingImageConstPointer 
MovingImageConstPointer
typedef
Superclass1::MovingImageDerivativeScalesType 
MovingImageDerivativeScalesType
typedef
Superclass1::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
typedef
Superclass1::MovingImageLimiterType 
MovingImageLimiterType
typedef
Superclass1::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass1::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass1::MovingImagePixelType 
MovingImagePixelType
typedef
Superclass1::MovingImageRegionType 
MovingImageRegionType
typedef
Superclass1::MovingImageType 
MovingImageType
typedef
Superclass1::OutputPointType 
OutputPointType
typedef Superclass1::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass1::RealType RealType
typedef
Superclass2::RegistrationPointer 
RegistrationPointer
typedef
Superclass2::RegistrationType 
RegistrationType
typedef
NormalizedMutualInformationMetric 
Self
typedef
ParzenWindowNormalizedMutualInformationImageToImageMetric
< typename MetricBase
< TElastix >::FixedImageType,
typename MetricBase< TElastix >
::MovingImageType
Superclass1
typedef MetricBase< TElastix > Superclass2
typedef TimerType::Pointer TimerPointer
typedef tmr::Timer TimerType
typedef
Superclass1::TransformJacobianType 
TransformJacobianType
typedef
Superclass1::TransformParametersType 
TransformParametersType
typedef
Superclass1::TransformPointer 
TransformPointer
typedef Superclass1::TransformType TransformType
- Public Types inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass::DerivativeType DerivativeType
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
typedef
Superclass::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
typedef
Superclass::FixedImageLimiterType 
FixedImageLimiterType
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
typedef Superclass::FixedImageType FixedImageType
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass::GradientImagePointer 
GradientImagePointer
typedef
Superclass::GradientImageType 
GradientImageType
typedef
Superclass::GradientPixelType 
GradientPixelType
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
typedef
Superclass::ImageSamplerPointer 
ImageSamplerPointer
typedef
Superclass::ImageSamplerType 
ImageSamplerType
typedef Superclass::InputPointType InputPointType
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass::InterpolatorType 
InterpolatorType
typedef Superclass::MeasureType MeasureType
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
typedef
Superclass::MovingImageDerivativeScalesType 
MovingImageDerivativeScalesType
typedef
Superclass::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
typedef
Superclass::MovingImageLimiterType 
MovingImageLimiterType
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
typedef
Superclass::MovingImageRegionType 
MovingImageRegionType
typedef Superclass::MovingImageType MovingImageType
typedef Superclass::OutputPointType OutputPointType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::RealType RealType
typedef
ParzenWindowNormalizedMutualInformationImageToImageMetric 
Self
typedef
ParzenWindowHistogramImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::MovingImageType
Superclass
typedef
Superclass::TransformJacobianType 
TransformJacobianType
typedef
Superclass::TransformParametersType 
TransformParametersType
typedef
Superclass::TransformPointer 
TransformPointer
typedef Superclass::TransformType TransformType
- Public Types inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass::DerivativeType DerivativeType
typedef
Superclass::DerivativeValueType 
DerivativeValueType
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
typedef
Superclass::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
typedef
Superclass::FixedImageLimiterType 
FixedImageLimiterType
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
typedef Superclass::FixedImageType FixedImageType
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass::GradientImagePointer 
GradientImagePointer
typedef
Superclass::GradientImageType 
GradientImageType
typedef
Superclass::GradientPixelType 
GradientPixelType
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
typedef
Superclass::ImageSamplerPointer 
ImageSamplerPointer
typedef
Superclass::ImageSamplerType 
ImageSamplerType
typedef Superclass::InputPointType InputPointType
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass::InterpolatorType 
InterpolatorType
typedef Superclass::MeasureType MeasureType
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
typedef
Superclass::MovingImageDerivativeScalesType 
MovingImageDerivativeScalesType
typedef
Superclass::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
typedef
Superclass::MovingImageLimiterType 
MovingImageLimiterType
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
typedef
Superclass::MovingImageRegionType 
MovingImageRegionType
typedef Superclass::MovingImageType MovingImageType
typedef Superclass::OutputPointType OutputPointType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::RealType RealType
typedef
ParzenWindowHistogramImageToImageMetric 
Self
typedef
AdvancedImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::MovingImageType
Superclass
typedef
Superclass::TransformJacobianType 
TransformJacobianType
typedef
Superclass::TransformParametersType 
TransformParametersType
typedef
Superclass::TransformPointer 
TransformPointer
typedef Superclass::TransformType TransformType
- Public Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef AdvancedTransform
< ScalarType,
FixedImageDimension,
MovingImageDimension > 
AdvancedTransformType
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass::DerivativeType DerivativeType
typedef DerivativeType::ValueType DerivativeValueType
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
typedef
FixedImageLimiterType::OutputType 
FixedImageLimiterOutputType
typedef LimiterFunctionBase
< RealType,
FixedImageDimension > 
FixedImageLimiterType
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
typedef FixedImageType::PixelType FixedImagePixelType
typedef FixedImageType::Pointer FixedImagePointer
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
typedef Superclass::FixedImageType FixedImageType
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass::GradientImagePointer 
GradientImagePointer
typedef
Superclass::GradientImageType 
GradientImageType
typedef
Superclass::GradientPixelType 
GradientPixelType
typedef vnl_sparse_matrix
< HessianValueType
HessianType
typedef DerivativeType::ValueType HessianValueType
typedef
ImageSamplerType::OutputVectorContainerPointer 
ImageSampleContainerPointer
typedef
ImageSamplerType::OutputVectorContainerType 
ImageSampleContainerType
typedef ImageSamplerType::Pointer ImageSamplerPointer
typedef ImageSamplerBase
< FixedImageType
ImageSamplerType
typedef Superclass::InputPointType InputPointType
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass::InterpolatorType 
InterpolatorType
typedef Superclass::MeasureType MeasureType
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
typedef FixedArray< double,
itkGetStaticConstMacro(MovingImageDimension) > 
MovingImageDerivativeScalesType
typedef
MovingImageLimiterType::OutputType 
MovingImageLimiterOutputType
typedef LimiterFunctionBase
< RealType,
MovingImageDimension > 
MovingImageLimiterType
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
typedef MovingImageType::Pointer MovingImagePointer
typedef MovingImageType::RegionType MovingImageRegionType
typedef Superclass::MovingImageType MovingImageType
typedef Superclass::OutputPointType OutputPointType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::RealType RealType
typedef TransformType::ScalarType ScalarType
typedef AdvancedImageToImageMetric Self
typedef ImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::MovingImageType
Superclass
typedef
Superclass::TransformJacobianType 
TransformJacobianType
typedef
Superclass::TransformParametersType 
TransformParametersType
typedef
Superclass::TransformPointer 
TransformPointer
typedef Superclass::TransformType TransformType
- Public Types inherited from elastix::MetricBase< TElastix >
typedef
AdvancedImageToImageMetric
< FixedImageType,
MovingImageType
AdvancedMetricType
typedef
Superclass::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass::ConfigurationType 
ConfigurationType
typedef
ITKBaseType::ParametersValueType 
CoordinateRepresentationType
typedef Superclass::ElastixPointer ElastixPointer
typedef Superclass::ElastixType ElastixType
typedef ElastixType::FixedImageType FixedImageType
typedef PointSet
< CoordinateRepresentationType,
FixedImageDimension,
DefaultStaticMeshTraits
< CoordinateRepresentationType,
FixedImageDimension,
FixedImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
FixedPointSetType
typedef FixedImageType::PointType FixedPointType
typedef FixedPointType::ValueType FixedPointValueType
typedef
AdvancedMetricType::ImageSamplerType 
ImageSamplerBaseType
typedef SingleValuedCostFunction ITKBaseType
typedef ITKBaseType::MeasureType MeasureType
typedef
ElastixType::MovingImageType 
MovingImageType
typedef PointSet
< CoordinateRepresentationType,
MovingImageDimension,
DefaultStaticMeshTraits
< CoordinateRepresentationType,
MovingImageDimension,
MovingImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
MovingPointSetType
typedef MovingImageType::PointType MovingPointType
typedef MovingPointType::ValueType MovingPointValueType
typedef
Superclass::RegistrationPointer 
RegistrationPointer
typedef
Superclass::RegistrationType 
RegistrationType
typedef MetricBase Self
typedef BaseComponentSE< TElastix > Superclass
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef
ElastixType::ConfigurationPointer 
ConfigurationPointer
typedef
ElastixType::ConfigurationType 
ConfigurationType
typedef ElastixType::Pointer ElastixPointer
typedef TElastix ElastixType
typedef RegistrationTypeRegistrationPointer
typedef
ElastixType::RegistrationBaseType 
RegistrationType
typedef BaseComponentSE Self
typedef BaseComponent Superclass

Public Member Functions

virtual void BeforeEachResolution (void)
 elxClassNameMacro ("NormalizedMutualInformation")
virtual const char * GetClassName () const
virtual void Initialize (void) throw (ExceptionObject)
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
- Public Member Functions inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
MeasureType GetValue (const ParametersType &parameters) const
void GetValueAndDerivative (const ParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const
- Public Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
void GetDerivative (const ParametersType &parameters, DerivativeType &Derivative) const
virtual double GetFiniteDifferencePerturbation () const
virtual unsigned int GetFixedKernelBSplineOrder () const
virtual unsigned int GetMovingKernelBSplineOrder () const
virtual unsigned long GetNumberOfFixedHistogramBins ()
virtual unsigned long GetNumberOfMovingHistogramBins ()
virtual bool GetUseDerivative () const
virtual const boolGetUseExplicitPDFDerivatives ()
virtual bool GetUseFiniteDifferenceDerivative () const
virtual void SetFiniteDifferencePerturbation (double _arg)
virtual void SetFixedKernelBSplineOrder (unsigned int _arg)
virtual void SetMovingKernelBSplineOrder (unsigned int _arg)
virtual void SetNumberOfFixedHistogramBins (unsigned long _arg)
virtual void SetNumberOfMovingHistogramBins (unsigned long _arg)
virtual void SetUseDerivative (bool _arg)
virtual void SetUseExplicitPDFDerivatives (bool _arg)
virtual void SetUseFiniteDifferenceDerivative (bool _arg)
virtual void UseExplicitPDFDerivativesOff ()
virtual void UseExplicitPDFDerivativesOn ()
- Public Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual const
FixedImageLimiterType
GetFixedImageLimiter ()
virtual double GetFixedLimitRangeRatio () const
virtual ImageSamplerTypeGetImageSampler (void) const
virtual const
MovingImageDerivativeScalesType
GetMovingImageDerivativeScales ()
virtual const
MovingImageLimiterType
GetMovingImageLimiter ()
virtual double GetMovingLimitRangeRatio () const
virtual double GetRequiredRatioOfValidSamples () const
virtual void GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
const AdvancedTransformTypeGetTransform (void) const
virtual bool GetUseFixedImageLimiter () const
virtual bool GetUseImageSampler () const
virtual bool GetUseMovingImageDerivativeScales () const
virtual bool GetUseMovingImageLimiter () const
 itkStaticConstMacro (MovingImageDimension, unsigned int, MetricBase< TElastix >::MovingImageType::ImageDimension)
 itkStaticConstMacro (FixedImageDimension, unsigned int, MetricBase< TElastix >::FixedImageType::ImageDimension)
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
virtual void SetFixedLimitRangeRatio (double _arg)
virtual void SetImageSampler (ImageSamplerType *_arg)
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
virtual void SetMovingLimitRangeRatio (double _arg)
virtual void SetRequiredRatioOfValidSamples (double _arg)
virtual void SetTransform (AdvancedTransformType *arg)
virtual void SetUseMovingImageDerivativeScales (bool _arg)
- Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void AfterEachIterationBase (void)
virtual void BeforeEachResolutionBase (void)
virtual ImageSamplerBaseTypeGetAdvancedMetricImageSampler (void) const
virtual bool GetAdvancedMetricUseImageSampler (void) const
virtual ITKBaseTypeGetAsITKBaseType (void)
virtual const ITKBaseTypeGetAsITKBaseType (void) const
virtual MeasureType GetCurrentExactMetricValue (void) const
virtual bool GetShowExactMetricValue (void) const
virtual void SelectNewSamples (void)
virtual void SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
virtual ElastixTypeGetElastix (void) const
virtual RegistrationPointer GetRegistration (void) const
virtual void SetConfiguration (ConfigurationType *_arg)
virtual void SetElastix (ElastixType *_arg)
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration (void)
virtual void AfterEachResolution (void)
virtual void AfterEachResolutionBase (void)
virtual void AfterRegistration (void)
virtual void AfterRegistrationBase (void)
virtual int BeforeAll (void)
virtual int BeforeAllBase (void)
virtual void BeforeRegistration (void)
virtual void BeforeRegistrationBase (void)
virtual const char * elxGetClassName (void) const
virtual const char * GetComponentLabel (void) const
virtual void SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions

static Pointer New ()

Protected Member Functions

 NormalizedMutualInformationMetric ()
virtual ~NormalizedMutualInformationMetric ()
- Protected Member Functions inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual void ComputeLogMarginalPDF (MarginalPDFType &pdf) const
virtual MeasureType ComputeNormalizedMutualInformation (MeasureType &jointEntropy) const
 ParzenWindowNormalizedMutualInformationImageToImageMetric ()
void PrintSelf (std::ostream &os, Indent indent) const
virtual ~ParzenWindowNormalizedMutualInformationImageToImageMetric ()
- Protected Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual void ComputeIncrementalMarginalPDFs (const JointPDFDerivativesType *incrementalPDF, IncrementalMarginalPDFType *fixedIncrementalMarginalPDF, IncrementalMarginalPDFType *movingIncrementalMarginalPDF) const
virtual void ComputeMarginalPDF (const JointPDFType *jointPDF, MarginalPDFType &marginalPDF, unsigned int direction) const
virtual void ComputePDFs (const ParametersType &parameters) const
virtual void ComputePDFsAndIncrementalPDFs (const ParametersType &parameters) const
virtual void ComputePDFsAndPDFDerivatives (const ParametersType &parameters) const
void EvaluateParzenValues (double parzenWindowTerm, OffsetValueType parzenWindowIndex, const KernelFunctionType *kernel, ParzenValueContainerType &parzenValues) const
void EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
virtual void GetValueAndAnalyticDerivative (const ParametersType &, MeasureType &, DerivativeType &) const
virtual void GetValueAndFiniteDifferenceDerivative (const ParametersType &, MeasureType &, DerivativeType &) const
virtual void InitializeHistograms (void)
virtual void InitializeKernels (void)
virtual void NormalizeJointPDF (JointPDFType *pdf, double factor) const
virtual void NormalizeJointPDFDerivatives (JointPDFDerivativesType *pdf, double factor) const
 ParzenWindowHistogramImageToImageMetric ()
virtual void UpdateJointPDFAndDerivatives (RealType fixedImageValue, RealType movingImageValue, const DerivativeType *imageJacobian, const NonZeroJacobianIndicesType *nzji) const
virtual void UpdateJointPDFAndIncrementalPDFs (RealType fixedImageValue, RealType movingImageValue, RealType movingMaskValue, const DerivativeType &movingImageValuesRight, const DerivativeType &movingImageValuesLeft, const DerivativeType &movingMaskValuesRight, const DerivativeType &movingMaskValuesLeft, const NonZeroJacobianIndicesType &nzji) const
void UpdateJointPDFDerivatives (const JointPDFIndexType &pdfIndex, double factor, const DerivativeType &imageJacobian, const NonZeroJacobianIndicesType &nzji) const
virtual ~ParzenWindowHistogramImageToImageMetric ()
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
 AdvancedImageToImageMetric ()
virtual void CheckForAdvancedTransform (void)
virtual void CheckForBSplineInterpolator (void)
virtual void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
virtual void ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType &region)
virtual void ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType &region)
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
virtual bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
virtual void InitializeImageSampler (void) throw ( ExceptionObject )
virtual void InitializeLimiters (void)
virtual bool IsInsideMovingMask (const MovingImagePointType &point) const
virtual void SetUseFixedImageLimiter (bool _arg)
virtual void SetUseImageSampler (bool _arg)
virtual void SetUseMovingImageLimiter (bool _arg)
virtual bool TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
virtual ~AdvancedImageToImageMetric ()
- Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType GetExactValue (const ParametersType &parameters)
 MetricBase ()
virtual ~MetricBase ()
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
virtual ~BaseComponentSE ()
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
virtual ~BaseComponent ()

Private Member Functions

 NormalizedMutualInformationMetric (const Self &)
void operator= (const Self &)

Additional Inherited Members

- Protected Types inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef
Superclass::BSplineInterpolatorType 
BSplineInterpolatorType
typedef
Superclass::CentralDifferenceGradientFilterType 
CentralDifferenceGradientFilterType
typedef
Superclass::FixedImageIndexType 
FixedImageIndexType
typedef
Superclass::FixedImageIndexValueType 
FixedImageIndexValueType
typedef
Superclass::FixedImagePointType 
FixedImagePointType
typedef
Superclass::IncrementalMarginalPDFType 
IncrementalMarginalPDFType
typedef
Superclass::JointPDFDerivativesIndexType 
JointPDFDerivativesIndexType
typedef
Superclass::JointPDFDerivativesRegionType 
JointPDFDerivativesRegionType
typedef
Superclass::JointPDFDerivativesSizeType 
JointPDFDerivativesSizeType
typedef
Superclass::JointPDFDerivativesType 
JointPDFDerivativesType
typedef
Superclass::JointPDFIndexType 
JointPDFIndexType
typedef
Superclass::JointPDFRegionType 
JointPDFRegionType
typedef
Superclass::JointPDFSizeType 
JointPDFSizeType
typedef Superclass::JointPDFType JointPDFType
typedef
Superclass::KernelFunctionType 
KernelFunctionType
typedef Superclass::MarginalPDFType MarginalPDFType
typedef
Superclass::MovingImageContinuousIndexType 
MovingImageContinuousIndexType
typedef
Superclass::MovingImageDerivativeType 
MovingImageDerivativeType
typedef
Superclass::MovingImageIndexType 
MovingImageIndexType
typedef
Superclass::MovingImagePointType 
MovingImagePointType
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
typedef
Superclass::ParzenValueContainerType 
ParzenValueContainerType
typedef Superclass::PDFValueType PDFValueType
- Protected Types inherited from elastix::MetricBase< TElastix >
typedef itk::ImageGridSampler
< FixedImageType
ExactMetricImageSamplerType
typedef
ExactMetricImageSamplerType::SampleGridSpacingType 
ExactMetricSampleGridSpacingType
typedef ITKBaseType::ParametersType ParametersType
- Protected Attributes inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
double m_Alpha
KernelFunctionType::Pointer m_DerivativeMovingKernel
double m_FixedImageBinSize
MarginalPDFType m_FixedImageMarginalPDF
double m_FixedImageNormalizedMin
IncrementalMarginalPDFType::Pointer m_FixedIncrementalMarginalPDFLeft
IncrementalMarginalPDFType::Pointer m_FixedIncrementalMarginalPDFRight
KernelFunctionType::Pointer m_FixedKernel
double m_FixedParzenTermToIndexOffset
JointPDFDerivativesType::Pointer m_IncrementalJointPDFLeft
JointPDFDerivativesType::Pointer m_IncrementalJointPDFRight
JointPDFType::Pointer m_JointPDF
JointPDFDerivativesType::Pointer m_JointPDFDerivatives
JointPDFRegionType m_JointPDFWindow
double m_MovingImageBinSize
MarginalPDFType m_MovingImageMarginalPDF
double m_MovingImageNormalizedMin
IncrementalMarginalPDFType::Pointer m_MovingIncrementalMarginalPDFLeft
IncrementalMarginalPDFType::Pointer m_MovingIncrementalMarginalPDFRight
KernelFunctionType::Pointer m_MovingKernel
double m_MovingParzenTermToIndexOffset
DerivativeType m_PerturbedAlphaLeft
DerivativeType m_PerturbedAlphaRight
- Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType m_CurrentExactMetricValue
ExactMetricSampleGridSpacingType m_ExactMetricSampleGridSpacing
ExactMetricImageSamplerType::Pointer m_ExactMetricSampler
bool m_ShowExactMetricValue

Detailed Description

template<class TElastix>
class elastix::NormalizedMutualInformationMetric< TElastix >

A metric based on the itk::ParzenWindowNormalizedMutualInformationImageToImageMetric.

The parameters used in this class are:

Parameters:
Metric: Select this metric as follows:
(Metric "NormalizedMutualInformation")
Parameters:
NumberOfHistogramBins: The size of the histogram. Must be given for each resolution, or for all resolutions at once.
example: (NumberOfHistogramBins 32 32 64)
The default is 32 for each resolution.
Parameters:
NumberOfFixedHistogramBins: The size of the histogram in the fixed dimension. Can be given for each resolution, or for all resolutions at once. If not given, NumberOfHistograms is used.
example: (NumberOfFixedHistogramBins 32 32 64)
The default is the value of NumberOfHistograms.
Parameters:
NumberOfMovingHistogramBins: The size of the histogram in the fixed dimension. Can be given for each resolution, or for all resolutions at once. If not given, NumberOfHistograms is used.
example: (NumberOfMovingHistogramBins 32 32 64)
The default is the value of NumberOfHistograms.
Parameters:
FixedKernelBSplineOrder: The B-spline order of the Parzen window, used to estimate the joint histogram. Can be given for each resolution, or for all resolutions at once.
example: (FixedKernelBSplineOrder 0 1 1)
The default value is 0.
Parameters:
MovingKernelBSplineOrder: The B-spline order of the Parzen window, used to estimate the joint histogram. Can be given for each resolution, or for all resolutions at once.
example: (MovingKernelBSplineOrder 3 3 3)
The default value is 3.
Parameters:
FixedLimitRangeRatio: The relative extension of the intensity range of the fixed image.
If your image has gray values from 0 to 1000 and the FixedLimitRangeRatio is 0.001, the joint histogram will expect fixed image gray values from -0.001 to 1000.001. This may be useful if you use high order B-spline interpolator for the fixed image.
example: (FixedLimitRangeRatio 0.001 0.01 0.01)
The default value is 0.01. Can be given for each resolution, or for all resolutions at once.
Parameters:
MovingLimitRangeRatio: The relative extension of the intensity range of the moving image.
If your image has gray values from 0 to 1000 and the MovingLimitRangeRatio is 0.001, the joint histogram will expect moving image gray values from -0.001 to 1000.001. This may be useful if you use high order B-spline interpolator for the moving image.
example: (MovingLimitRangeRatio 0.001 0.01 0.01)
The default value is 0.01. Can be given for each resolution, or for all resolutions at once.
See Also
ParzenWindowNormalizedMutualInformationImageToImageMetric

Definition at line 73 of file elxNormalizedMutualInformationMetric.h.

Member Typedef Documentation

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template<class TElastix >
typedef SmartPointer<const Self> elastix::NormalizedMutualInformationMetric< TElastix >::ConstPointer

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Typedefs from the superclass.

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Typedef's inherited from Elastix.

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template<class TElastix >
typedef SmartPointer<Self> elastix::NormalizedMutualInformationMetric< TElastix >::Pointer

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template<class TElastix >
typedef Superclass1::RealType elastix::NormalizedMutualInformationMetric< TElastix >::RealType

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Standard ITK-stuff.

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template<class TElastix >
typedef MetricBase<TElastix> elastix::NormalizedMutualInformationMetric< TElastix >::Superclass2

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template<class TElastix >
typedef TimerType::Pointer elastix::NormalizedMutualInformationMetric< TElastix >::TimerPointer

Typedef for timer.

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template<class TElastix >
typedef tmr::Timer elastix::NormalizedMutualInformationMetric< TElastix >::TimerType

Typedef for timer.

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Constructor & Destructor Documentation

template<class TElastix >
elastix::NormalizedMutualInformationMetric< TElastix >::NormalizedMutualInformationMetric ( )
inlineprotected

The constructor.

Definition at line 186 of file elxNormalizedMutualInformationMetric.h.

template<class TElastix >
virtual elastix::NormalizedMutualInformationMetric< TElastix >::~NormalizedMutualInformationMetric ( )
inlineprotectedvirtual

The destructor.

Definition at line 192 of file elxNormalizedMutualInformationMetric.h.

template<class TElastix >
elastix::NormalizedMutualInformationMetric< TElastix >::NormalizedMutualInformationMetric ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual void elastix::NormalizedMutualInformationMetric< TElastix >::BeforeEachResolution ( void  )
virtual

Execute stuff before each new pyramid resolution:

  • Set the number of histogram bins.
  • Set the CheckNumberOfSamples option.
  • Set the fixed/moving LimitRangeRatio
  • Set the fixed/moving limiter.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::NormalizedMutualInformationMetric< TElastix >::elxClassNameMacro ( "NormalizedMutualInformation"  )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "NormalizedMutualInformation")

template<class TElastix >
virtual const char* elastix::NormalizedMutualInformationMetric< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
virtual void elastix::NormalizedMutualInformationMetric< TElastix >::Initialize ( void  ) throw (ExceptionObject)
virtual

Set up a timer to measure the intialisation time and call the Superclass' implementation.

Reimplemented from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >.

template<class TElastix >
elastix::NormalizedMutualInformationMetric< TElastix >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension.

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
elastix::NormalizedMutualInformationMetric< TElastix >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)

The moving image dimension.

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
static Pointer elastix::NormalizedMutualInformationMetric< TElastix >::New ( )
static
template<class TElastix >
void elastix::NormalizedMutualInformationMetric< TElastix >::operator= ( const Self )
private

The private copy constructor.



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