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#include <elxAffineDTITransform.h>
Public Member Functions | |
virtual void | BeforeRegistration (void) |
elxClassNameMacro ("AffineDTITransform") | |
virtual const char * | GetClassName () const |
virtual void | InitializeTransform (void) |
itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension) | |
virtual void | ReadFromFile (void) |
virtual void | SetScales (void) |
virtual void | WriteToFile (const ParametersType ¶m) const |
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virtual CurrentTransformType * | GetCurrentTransform () |
virtual const ParametersType & | GetFixedParameters (void) const |
virtual bool | GetHasNonZeroSpatialHessian (void) const |
virtual const InitialTransformType * | GetInitialTransform () |
virtual bool | GetInverse (Self *inverse) const |
virtual const JacobianType & | GetJacobian (const InputPointType &point) const |
virtual void | GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual unsigned long | GetNumberOfNonZeroJacobianIndices (void) const |
virtual unsigned int | GetNumberOfParameters (void) const |
virtual const ParametersType & | GetParameters (void) const |
virtual void | GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const |
virtual void | GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const |
virtual bool | GetUseAddition () const |
virtual bool | GetUseComposition () const |
virtual bool | HasNonZeroJacobianOfSpatialHessian (void) const |
virtual bool | IsLinear (void) const |
itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions) | |
virtual void | SetCurrentTransform (CurrentTransformType *_arg) |
virtual void | SetFixedParameters (const ParametersType &fixedParam) |
virtual void | SetInitialTransform (const InitialTransformType *_arg) |
virtual void | SetParameters (const ParametersType ¶m) |
virtual void | SetParametersByValue (const ParametersType ¶m) |
virtual void | SetUseAddition (bool _arg) |
virtual void | SetUseComposition (bool _arg) |
virtual OutputPointType | TransformPoint (const InputPointType &point) const |
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virtual bool | GetHasNonZeroJacobianOfSpatialHessian () const |
virtual void | GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const |
virtual void | GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const |
itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions) | |
itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions) | |
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virtual void | AfterRegistrationBase (void) |
virtual int | BeforeAllBase (void) |
virtual int | BeforeAllTransformix (void) |
virtual void | BeforeRegistrationBase (void) |
virtual void | ComputeDeterminantOfSpatialJacobian (void) const |
virtual void | ComputeSpatialJacobian (void) const |
virtual const CombinationTransformType * | GetAsCombinationTransform (void) const |
virtual CombinationTransformType * | GetAsCombinationTransform (void) |
virtual ITKBaseType * | GetAsITKBaseType (void) |
virtual const ITKBaseType * | GetAsITKBaseType (void) const |
virtual const InitialTransformType * | GetInitialTransform (void) const |
virtual const char * | GetTransformParametersFileName () const |
itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension) | |
itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension) | |
virtual void | ReadInitialTransformFromFile (const char *transformParameterFileName) |
virtual void | SetFinalParameters (void) |
virtual void | SetInitialTransform (InitialTransformType *_arg) |
virtual void | SetReadWriteTransformParameters (const bool _arg) |
virtual void | SetTransformParametersFileName (const char *filename) |
virtual void | TransformPoints (void) const |
virtual void | TransformPointsAllPoints (void) const |
virtual void | TransformPointsSomePoints (const std::string filename) const |
virtual void | TransformPointsSomePointsVTK (const std::string filename) const |
virtual void | WriteToFile (void) const |
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virtual ConfigurationType * | GetConfiguration (void) const |
virtual ElastixType * | GetElastix (void) const |
virtual RegistrationPointer | GetRegistration (void) const |
virtual void | SetConfiguration (ConfigurationType *_arg) |
virtual void | SetElastix (ElastixType *_arg) |
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virtual void | AfterEachIteration (void) |
virtual void | AfterEachIterationBase (void) |
virtual void | AfterEachResolution (void) |
virtual void | AfterEachResolutionBase (void) |
virtual void | AfterRegistration (void) |
virtual int | BeforeAll (void) |
virtual void | BeforeEachResolution (void) |
virtual void | BeforeEachResolutionBase (void) |
virtual const char * | elxGetClassName (void) const |
virtual const char * | GetComponentLabel (void) const |
virtual void | SetComponentLabel (const char *label, unsigned int idx) |
Static Public Member Functions | |
static Pointer | New () |
Protected Member Functions | |
AffineDTITransformElastix () | |
virtual bool | ReadCenterOfRotationPoint (InputPointType &rotationPoint) const |
virtual | ~AffineDTITransformElastix () |
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AdvancedCombinationTransform () | |
const JacobianType & | GetJacobianNoCurrentTransform (const InputPointType &point) const |
void | GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
const JacobianType & | GetJacobianNoInitialTransform (const InputPointType &point) const |
void | GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
void | GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
const JacobianType & | GetJacobianUseAddition (const InputPointType &point) const |
void | GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
const JacobianType & | GetJacobianUseComposition (const InputPointType &point) const |
void | GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
void | GetSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh) const |
void | GetSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh) const |
void | GetSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh) const |
void | GetSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh) const |
void | GetSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj) const |
void | GetSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj) const |
void | GetSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj) const |
void | GetSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj) const |
virtual void | NoCurrentTransformSet (void) const throw (ExceptionObject) |
OutputPointType | TransformPointNoCurrentTransform (const InputPointType &point) const |
OutputPointType | TransformPointNoInitialTransform (const InputPointType &point) const |
OutputPointType | TransformPointUseAddition (const InputPointType &point) const |
OutputPointType | TransformPointUseComposition (const InputPointType &point) const |
virtual void | UpdateCombinationMethod (void) |
virtual | ~AdvancedCombinationTransform () |
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AdvancedTransform () | |
AdvancedTransform (unsigned int Dimension, unsigned int NumberOfParameters) | |
virtual | ~AdvancedTransform () |
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void | AutomaticScalesEstimation (ScalesType &scales) const |
TransformBase () | |
virtual | ~TransformBase () |
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BaseComponentSE () | |
virtual | ~BaseComponentSE () |
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BaseComponent () | |
virtual | ~BaseComponent () |
Private Member Functions | |
AffineDTITransformElastix (const Self &) | |
void | operator= (const Self &) |
Private Attributes | |
AffineDTITransformPointer | m_AffineDTITransform |
A transform based on the itk AffineDTITransform.
This transform is an affine transformation, with a different parametrisation than the usual one. It is specialised for MR-DTI applications. See also the description of the itk::AffineDTI3DTransform.
The parameters used in this class are:
(Transform "AffineDTITransform")
(Scales -1 -1 -1 100000000 -1 -1 -1 -1 -1 -1 -1 -1)
(CenterOfRotation 128 128 90)
(AutomaticTransformInitialization "true")
The transform parameters necessary for transformix, additionally defined by this class, are: *
(CenterOfRotation 128 128 90)
(CenterOfRotationPoint 10.555 6.666 12.345)
(MatrixTranslation 1 0 0 0 1 0 0 0 0.9 0.1 0.1 0.2)
Definition at line 76 of file elxAffineDTITransform.h.
typedef AffineDTITransformType::Pointer elastix::AffineDTITransformElastix< TElastix >::AffineDTITransformPointer |
Definition at line 134 of file elxAffineDTITransform.h.
typedef AffineDTITransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::AffineDTITransformElastix< TElastix >::AffineDTITransformType |
The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform
Definition at line 97 of file elxAffineDTITransform.h.
typedef Superclass2::CombinationTransformType elastix::AffineDTITransformElastix< TElastix >::CombinationTransformType |
Definition at line 148 of file elxAffineDTITransform.h.
typedef Superclass2::ConfigurationPointer elastix::AffineDTITransformElastix< TElastix >::ConfigurationPointer |
Definition at line 141 of file elxAffineDTITransform.h.
typedef Superclass2::ConfigurationType elastix::AffineDTITransformElastix< TElastix >::ConfigurationType |
Definition at line 140 of file elxAffineDTITransform.h.
typedef SmartPointer<const Self> elastix::AffineDTITransformElastix< TElastix >::ConstPointer |
Definition at line 100 of file elxAffineDTITransform.h.
typedef Superclass2::CoordRepType elastix::AffineDTITransformElastix< TElastix >::CoordRepType |
Definition at line 144 of file elxAffineDTITransform.h.
typedef FixedImageType::DirectionType elastix::AffineDTITransformElastix< TElastix >::DirectionType |
Definition at line 157 of file elxAffineDTITransform.h.
typedef Superclass2::ElastixPointer elastix::AffineDTITransformElastix< TElastix >::ElastixPointer |
Definition at line 139 of file elxAffineDTITransform.h.
typedef Superclass2::ElastixType elastix::AffineDTITransformElastix< TElastix >::ElastixType |
Typedef's inherited from TransformBase.
Definition at line 138 of file elxAffineDTITransform.h.
typedef Superclass2::FixedImageType elastix::AffineDTITransformElastix< TElastix >::FixedImageType |
Definition at line 145 of file elxAffineDTITransform.h.
typedef FixedImageType::IndexType elastix::AffineDTITransformElastix< TElastix >::IndexType |
Other typedef's.
Definition at line 151 of file elxAffineDTITransform.h.
typedef IndexType::IndexValueType elastix::AffineDTITransformElastix< TElastix >::IndexValueType |
Definition at line 152 of file elxAffineDTITransform.h.
typedef Superclass1::InputCovariantVectorType elastix::AffineDTITransformElastix< TElastix >::InputCovariantVectorType |
Definition at line 129 of file elxAffineDTITransform.h.
typedef Superclass1::InputPointType elastix::AffineDTITransformElastix< TElastix >::InputPointType |
Definition at line 125 of file elxAffineDTITransform.h.
typedef Superclass1::InputVectorType elastix::AffineDTITransformElastix< TElastix >::InputVectorType |
Definition at line 127 of file elxAffineDTITransform.h.
typedef Superclass1::InputVnlVectorType elastix::AffineDTITransformElastix< TElastix >::InputVnlVectorType |
Definition at line 131 of file elxAffineDTITransform.h.
typedef Superclass2::ITKBaseType elastix::AffineDTITransformElastix< TElastix >::ITKBaseType |
Definition at line 147 of file elxAffineDTITransform.h.
typedef Superclass1::JacobianType elastix::AffineDTITransformElastix< TElastix >::JacobianType |
Definition at line 123 of file elxAffineDTITransform.h.
typedef Superclass2::MovingImageType elastix::AffineDTITransformElastix< TElastix >::MovingImageType |
Definition at line 146 of file elxAffineDTITransform.h.
typedef AffineDTITransformType::OffsetType elastix::AffineDTITransformElastix< TElastix >::OffsetType |
Definition at line 135 of file elxAffineDTITransform.h.
typedef Superclass1::OutputCovariantVectorType elastix::AffineDTITransformElastix< TElastix >::OutputCovariantVectorType |
Definition at line 130 of file elxAffineDTITransform.h.
typedef Superclass1::OutputPointType elastix::AffineDTITransformElastix< TElastix >::OutputPointType |
Definition at line 126 of file elxAffineDTITransform.h.
typedef Superclass1::OutputVectorType elastix::AffineDTITransformElastix< TElastix >::OutputVectorType |
Definition at line 128 of file elxAffineDTITransform.h.
typedef Superclass1::OutputVnlVectorType elastix::AffineDTITransformElastix< TElastix >::OutputVnlVectorType |
Definition at line 132 of file elxAffineDTITransform.h.
typedef Superclass1::ParametersType elastix::AffineDTITransformElastix< TElastix >::ParametersType |
Definition at line 122 of file elxAffineDTITransform.h.
typedef SmartPointer<Self> elastix::AffineDTITransformElastix< TElastix >::Pointer |
Definition at line 99 of file elxAffineDTITransform.h.
typedef FixedImageType::PointType elastix::AffineDTITransformElastix< TElastix >::PointType |
Definition at line 154 of file elxAffineDTITransform.h.
typedef FixedImageType::RegionType elastix::AffineDTITransformElastix< TElastix >::RegionType |
Definition at line 156 of file elxAffineDTITransform.h.
typedef Superclass2::RegistrationPointer elastix::AffineDTITransformElastix< TElastix >::RegistrationPointer |
Definition at line 143 of file elxAffineDTITransform.h.
typedef Superclass2::RegistrationType elastix::AffineDTITransformElastix< TElastix >::RegistrationType |
Definition at line 142 of file elxAffineDTITransform.h.
typedef Superclass1::ScalarType elastix::AffineDTITransformElastix< TElastix >::ScalarType |
Typedefs inherited from the superclass. These are both in AffineDTI2D and AffineDTI3D.
Definition at line 121 of file elxAffineDTITransform.h.
typedef Superclass2::ScalesType elastix::AffineDTITransformElastix< TElastix >::ScalesType |
For scales setting in the optimizer
Definition at line 164 of file elxAffineDTITransform.h.
typedef AffineDTITransformElastix elastix::AffineDTITransformElastix< TElastix >::Self |
Standard ITK-stuff.
Definition at line 85 of file elxAffineDTITransform.h.
typedef FixedImageType::SizeType elastix::AffineDTITransformElastix< TElastix >::SizeType |
Definition at line 153 of file elxAffineDTITransform.h.
typedef FixedImageType::SpacingType elastix::AffineDTITransformElastix< TElastix >::SpacingType |
Definition at line 155 of file elxAffineDTITransform.h.
typedef AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::AffineDTITransformElastix< TElastix >::Superclass1 |
Definition at line 89 of file elxAffineDTITransform.h.
typedef elx::TransformBase< TElastix > elastix::AffineDTITransformElastix< TElastix >::Superclass2 |
Definition at line 91 of file elxAffineDTITransform.h.
typedef TransformInitializerType::Pointer elastix::AffineDTITransformElastix< TElastix >::TransformInitializerPointer |
Definition at line 161 of file elxAffineDTITransform.h.
typedef CenteredTransformInitializer< AffineDTITransformType, FixedImageType, MovingImageType> elastix::AffineDTITransformElastix< TElastix >::TransformInitializerType |
Definition at line 160 of file elxAffineDTITransform.h.
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The constructor.
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The destructor.
Definition at line 214 of file elxAffineDTITransform.h.
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The private constructor.
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Execute stuff before the actual registration:
Reimplemented from elastix::BaseComponent.
elastix::AffineDTITransformElastix< TElastix >::elxClassNameMacro | ( | "AffineDTITransform" | ) |
Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "AffineDTITransform")
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Run-time type information (and related methods).
Reimplemented from elastix::TransformBase< TElastix >.
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Initialize Transform.
It is not yet possible to enter an initial rotation angle.
elastix::AffineDTITransformElastix< TElastix >::itkStaticConstMacro | ( | SpaceDimension | , |
unsigned | int, | ||
Superclass2::FixedImageDimension | |||
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Dimension of the fixed image.
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Method for creation through the object factory.
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
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The private copy constructor.
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Try to read the CenterOfRotationPoint from the transform parameter file The CenterOfRotationPoint is already in world coordinates.
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Function to read transform-parameters from a file.
It reads the center of rotation and calls the superclass' implementation.
Reimplemented from elastix::TransformBase< TElastix >.
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Set the scales
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Function to write transform-parameters to a file. It writes the center of rotation to file and calls the superclass' implementation.
Reimplemented from elastix::TransformBase< TElastix >.
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Definition at line 227 of file elxAffineDTITransform.h.
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