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elastix::KNNGraphAlphaMutualInformationMetric< TElastix > Class Template Reference

#include <elxKNNGraphAlphaMutualInformationMetric.h>

Inheritance diagram for elastix::KNNGraphAlphaMutualInformationMetric< TElastix >:
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Collaboration diagram for elastix::KNNGraphAlphaMutualInformationMetric< TElastix >:
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Public Types

typedef
Superclass2::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass2::ConfigurationType 
ConfigurationType
typedef SmartPointer< const SelfConstPointer
typedef Superclass1::DerivativeType DerivativeType
typedef Superclass2::ElastixPointer ElastixPointer
typedef Superclass2::ElastixType ElastixType
typedef FixedImageType FixedFeatureImageType
typedef
Superclass1::FixedImageConstPointer 
FixedImageConstPointer
typedef Superclass1::FixedImageType FixedImageType
typedef
Superclass1::InterpolatorType 
InterpolatorType
typedef Superclass2::ITKBaseType ITKBaseType
typedef Superclass1::MeasureType MeasureType
typedef MovingImageType MovingFeatureImageType
typedef
Superclass1::MovingImageConstPointer 
MovingImageConstPointer
typedef
Superclass1::MovingImageType 
MovingImageType
typedef Superclass1::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef
Superclass2::RegistrationPointer 
RegistrationPointer
typedef
Superclass2::RegistrationType 
RegistrationType
typedef
KNNGraphAlphaMutualInformationMetric 
Self
typedef
KNNGraphAlphaMutualInformationImageToImageMetric
< typename MetricBase
< TElastix >::FixedImageType,
typename MetricBase< TElastix >
::MovingImageType
Superclass1
typedef MetricBase< TElastix > Superclass2
typedef TimerType::Pointer TimerPointer
typedef tmr::Timer TimerType
typedef
Superclass1::TransformJacobianType 
TransformJacobianType
typedef
Superclass1::TransformPointer 
TransformPointer
typedef Superclass1::TransformType TransformType
- Public Types inherited from itk::KNNGraphAlphaMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef ANNbdTree< ListSampleTypeANNbdTreeType
typedef ANNBruteForceTree
< ListSampleType
ANNBruteForceTreeType
typedef
ANNFixedRadiusTreeSearch
< ListSampleType
ANNFixedRadiusTreeSearchType
typedef ANNkDTree< ListSampleTypeANNkDTreeType
typedef ANNPriorityTreeSearch
< ListSampleType
ANNPriorityTreeSearchType
typedef ANNStandardTreeSearch
< ListSampleType
ANNStandardTreeSearchType
typedef BinaryTreeSearchBase
< ListSampleType
BinaryKNNTreeSearchType
typedef BinaryTreeBase
< ListSampleType
BinaryKNNTreeType
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass::DerivativeType DerivativeType
typedef DerivativeType::ValueType DerivativeValueType
typedef
BinaryKNNTreeSearchType::DistanceArrayType 
DistanceArrayType
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
typedef
Superclass::FixedImageInterpolatorVectorType 
FixedImageInterpolatorVectorType
typedef
Superclass::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
typedef
Superclass::FixedImageLimiterType 
FixedImageLimiterType
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
typedef
Superclass::FixedImageMaskVectorType 
FixedImageMaskVectorType
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
typedef
Superclass::FixedImageRegionVectorType 
FixedImageRegionVectorType
typedef Superclass::FixedImageType FixedImageType
typedef
Superclass::FixedImageVectorType 
FixedImageVectorType
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass::GradientImagePointer 
GradientImagePointer
typedef
Superclass::GradientImageType 
GradientImageType
typedef
Superclass::GradientPixelType 
GradientPixelType
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
typedef
Superclass::ImageSamplerPointer 
ImageSamplerPointer
typedef
Superclass::ImageSamplerType 
ImageSamplerType
typedef
BinaryKNNTreeSearchType::IndexArrayType 
IndexArrayType
typedef Superclass::InputPointType InputPointType
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass::InterpolatorType 
InterpolatorType
typedef
Superclass::InterpolatorVectorType 
InterpolatorVectorType
typedef ListSampleType::Pointer ListSamplePointer
typedef
Statistics::ListSampleCArray
< MeasurementVectorType,
double
ListSampleType
typedef Array< doubleMeasurementVectorType
typedef
MeasurementVectorType::ValueType 
MeasurementVectorValueType
typedef Superclass::MeasureType MeasureType
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
typedef
Superclass::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
typedef
Superclass::MovingImageLimiterType 
MovingImageLimiterType
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass::MovingImageMaskVectorType 
MovingImageMaskVectorType
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
typedef
Superclass::MovingImageRegionType 
MovingImageRegionType
typedef Superclass::MovingImageType MovingImageType
typedef
Superclass::MovingImageVectorType 
MovingImageVectorType
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
typedef Superclass::OutputPointType OutputPointType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::RealType RealType
typedef
KNNGraphAlphaMutualInformationImageToImageMetric 
Self
typedef
MultiInputImageToImageMetricBase
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::MovingImageType
Superclass
typedef
Superclass::TransformJacobianType 
TransformJacobianType
typedef
TransformJacobianType::ValueType 
TransformJacobianValueType
typedef
Superclass::TransformParametersType 
TransformParametersType
typedef
Superclass::TransformPointer 
TransformPointer
typedef Superclass::TransformType TransformType
- Public Types inherited from itk::MultiInputImageToImageMetricBase< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass::DerivativeType DerivativeType
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
typedef
FixedImageInterpolatorType::Pointer 
FixedImageInterpolatorPointer
typedef
InterpolateImageFunction
< FixedImageType,
CoordinateRepresentationType
FixedImageInterpolatorType
typedef std::vector
< FixedImageInterpolatorPointer
FixedImageInterpolatorVectorType
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
typedef std::vector
< FixedImageMaskPointer
FixedImageMaskVectorType
typedef
Superclass::FixedImagePointer 
FixedImagePointer
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
typedef std::vector
< FixedImageRegionType
FixedImageRegionVectorType
typedef Superclass::FixedImageType FixedImageType
typedef std::vector
< FixedImageConstPointer
FixedImageVectorType
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass::GradientImagePointer 
GradientImagePointer
typedef
Superclass::GradientImageType 
GradientImageType
typedef
Superclass::GradientPixelType 
GradientPixelType
typedef Superclass::InputPointType InputPointType
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass::InterpolatorType 
InterpolatorType
typedef std::vector
< InterpolatorPointer
InterpolatorVectorType
typedef Superclass::MeasureType MeasureType
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
typedef std::vector
< MovingImageMaskPointer
MovingImageMaskVectorType
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
typedef
Superclass::MovingImagePointer 
MovingImagePointer
typedef Superclass::MovingImageType MovingImageType
typedef std::vector
< MovingImageConstPointer
MovingImageVectorType
typedef Superclass::OutputPointType OutputPointType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::RealType RealType
typedef
MultiInputImageToImageMetricBase 
Self
typedef
AdvancedImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::MovingImageType
Superclass
typedef
Superclass::TransformJacobianType 
TransformJacobianType
typedef
Superclass::TransformParametersType 
TransformParametersType
typedef
Superclass::TransformPointer 
TransformPointer
typedef Superclass::TransformType TransformType
- Public Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef AdvancedTransform
< ScalarType,
FixedImageDimension,
MovingImageDimension > 
AdvancedTransformType
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass::DerivativeType DerivativeType
typedef DerivativeType::ValueType DerivativeValueType
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
typedef
FixedImageLimiterType::OutputType 
FixedImageLimiterOutputType
typedef LimiterFunctionBase
< RealType,
FixedImageDimension > 
FixedImageLimiterType
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
typedef FixedImageType::PixelType FixedImagePixelType
typedef FixedImageType::Pointer FixedImagePointer
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
typedef Superclass::FixedImageType FixedImageType
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass::GradientImagePointer 
GradientImagePointer
typedef
Superclass::GradientImageType 
GradientImageType
typedef
Superclass::GradientPixelType 
GradientPixelType
typedef vnl_sparse_matrix
< HessianValueType
HessianType
typedef DerivativeType::ValueType HessianValueType
typedef
ImageSamplerType::OutputVectorContainerPointer 
ImageSampleContainerPointer
typedef
ImageSamplerType::OutputVectorContainerType 
ImageSampleContainerType
typedef ImageSamplerType::Pointer ImageSamplerPointer
typedef ImageSamplerBase
< FixedImageType
ImageSamplerType
typedef Superclass::InputPointType InputPointType
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass::InterpolatorType 
InterpolatorType
typedef Superclass::MeasureType MeasureType
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
typedef FixedArray< double,
itkGetStaticConstMacro(MovingImageDimension) > 
MovingImageDerivativeScalesType
typedef
MovingImageLimiterType::OutputType 
MovingImageLimiterOutputType
typedef LimiterFunctionBase
< RealType,
MovingImageDimension > 
MovingImageLimiterType
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
typedef MovingImageType::Pointer MovingImagePointer
typedef MovingImageType::RegionType MovingImageRegionType
typedef Superclass::MovingImageType MovingImageType
typedef Superclass::OutputPointType OutputPointType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::RealType RealType
typedef TransformType::ScalarType ScalarType
typedef AdvancedImageToImageMetric Self
typedef ImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::MovingImageType
Superclass
typedef
Superclass::TransformJacobianType 
TransformJacobianType
typedef
Superclass::TransformParametersType 
TransformParametersType
typedef
Superclass::TransformPointer 
TransformPointer
typedef Superclass::TransformType TransformType
- Public Types inherited from elastix::MetricBase< TElastix >
typedef
AdvancedImageToImageMetric
< FixedImageType,
MovingImageType
AdvancedMetricType
typedef
Superclass::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass::ConfigurationType 
ConfigurationType
typedef
ITKBaseType::ParametersValueType 
CoordinateRepresentationType
typedef Superclass::ElastixPointer ElastixPointer
typedef Superclass::ElastixType ElastixType
typedef ElastixType::FixedImageType FixedImageType
typedef PointSet
< CoordinateRepresentationType,
FixedImageDimension,
DefaultStaticMeshTraits
< CoordinateRepresentationType,
FixedImageDimension,
FixedImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
FixedPointSetType
typedef FixedImageType::PointType FixedPointType
typedef FixedPointType::ValueType FixedPointValueType
typedef
AdvancedMetricType::ImageSamplerType 
ImageSamplerBaseType
typedef SingleValuedCostFunction ITKBaseType
typedef ITKBaseType::MeasureType MeasureType
typedef
ElastixType::MovingImageType 
MovingImageType
typedef PointSet
< CoordinateRepresentationType,
MovingImageDimension,
DefaultStaticMeshTraits
< CoordinateRepresentationType,
MovingImageDimension,
MovingImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
MovingPointSetType
typedef MovingImageType::PointType MovingPointType
typedef MovingPointType::ValueType MovingPointValueType
typedef
Superclass::RegistrationPointer 
RegistrationPointer
typedef
Superclass::RegistrationType 
RegistrationType
typedef MetricBase Self
typedef BaseComponentSE< TElastix > Superclass
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef
ElastixType::ConfigurationPointer 
ConfigurationPointer
typedef
ElastixType::ConfigurationType 
ConfigurationType
typedef ElastixType::Pointer ElastixPointer
typedef TElastix ElastixType
typedef RegistrationTypeRegistrationPointer
typedef
ElastixType::RegistrationBaseType 
RegistrationType
typedef BaseComponentSE Self
typedef BaseComponent Superclass

Public Member Functions

virtual void BeforeEachResolution (void)
virtual void BeforeRegistration (void)
 elxClassNameMacro ("KNNGraphAlphaMutualInformation")
virtual const char * GetClassName () const
virtual void Initialize (void) throw (ExceptionObject)
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
- Public Member Functions inherited from itk::KNNGraphAlphaMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual const doubleGetAlpha ()
virtual const doubleGetAvoidDivisionBy ()
void GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const
MeasureType GetValue (const TransformParametersType &parameters) const
void GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const
virtual void SetAlpha (double _arg)
void SetANNbdTree (unsigned int bucketSize, std::string splittingRule, std::string shrinkingRule)
void SetANNbdTree (unsigned int bucketSize, std::string splittingRuleFixed, std::string splittingRuleMoving, std::string splittingRuleJoint, std::string shrinkingRuleFixed, std::string shrinkingRuleMoving, std::string shrinkingRuleJoint)
void SetANNBruteForceTree (void)
void SetANNFixedRadiusTreeSearch (unsigned int kNearestNeighbors, double errorBound, double squaredRadius)
void SetANNkDTree (unsigned int bucketSize, std::string splittingRule)
void SetANNkDTree (unsigned int bucketSize, std::string splittingRuleFixed, std::string splittingRuleMoving, std::string splittingRuleJoint)
void SetANNPriorityTreeSearch (unsigned int kNearestNeighbors, double errorBound)
void SetANNStandardTreeSearch (unsigned int kNearestNeighbors, double errorBound)
virtual void SetAvoidDivisionBy (double _arg)
- Public Member Functions inherited from itk::MultiInputImageToImageMetricBase< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual const FixedImageTypeGetFixedImage (unsigned int pos) const
virtual const FixedImageTypeGetFixedImage (void) const
virtual
FixedImageInterpolatorType
GetFixedImageInterpolator (unsigned int pos) const
virtual
FixedImageInterpolatorType
GetFixedImageInterpolator (void) const
virtual FixedImageMaskTypeGetFixedImageMask (unsigned int pos) const
virtual FixedImageMaskTypeGetFixedImageMask (void) const
virtual const
FixedImageRegionType
GetFixedImageRegion (unsigned int pos) const
virtual const
FixedImageRegionType
GetFixedImageRegion (void) const
virtual InterpolatorTypeGetInterpolator (unsigned int pos) const
virtual InterpolatorTypeGetInterpolator (void) const
virtual bool GetInterpolatorsAreBSpline () const
virtual const MovingImageTypeGetMovingImage (unsigned int pos) const
virtual const MovingImageTypeGetMovingImage (void) const
virtual MovingImageMaskTypeGetMovingImageMask (unsigned int pos) const
virtual MovingImageMaskTypeGetMovingImageMask (void) const
virtual unsigned int GetNumberOfFixedImageInterpolators () const
virtual unsigned int GetNumberOfFixedImageMasks () const
virtual unsigned int GetNumberOfFixedImageRegions () const
virtual unsigned int GetNumberOfFixedImages () const
virtual unsigned int GetNumberOfInterpolators () const
virtual unsigned int GetNumberOfMovingImageMasks () const
virtual unsigned int GetNumberOfMovingImages () const
 itkSetNumberOfMacro (FixedImage)
 itkSetNumberOfMacro (FixedImageMask)
 itkSetNumberOfMacro (FixedImageRegion)
 itkSetNumberOfMacro (MovingImage)
 itkSetNumberOfMacro (MovingImageMask)
 itkSetNumberOfMacro (Interpolator)
 itkSetNumberOfMacro (FixedImageInterpolator)
 itkStaticConstMacro (MovingImageDimension, unsigned int, MetricBase< TElastix >::MovingImageType::ImageDimension)
 itkStaticConstMacro (FixedImageDimension, unsigned int, MetricBase< TElastix >::FixedImageType::ImageDimension)
virtual void SetFixedImage (const FixedImageType *_arg, unsigned int pos)
virtual void SetFixedImage (const FixedImageType *_arg)
virtual void SetFixedImageInterpolator (FixedImageInterpolatorType *_arg, unsigned int pos)
virtual void SetFixedImageInterpolator (FixedImageInterpolatorType *_arg)
virtual void SetFixedImageMask (FixedImageMaskType *_arg, unsigned int pos)
virtual void SetFixedImageMask (FixedImageMaskType *_arg)
virtual void SetFixedImageRegion (const FixedImageRegionType _arg, unsigned int pos)
virtual void SetFixedImageRegion (const FixedImageRegionType _arg)
virtual void SetInterpolator (InterpolatorType *_arg, unsigned int pos)
virtual void SetInterpolator (InterpolatorType *_arg)
virtual void SetMovingImage (const MovingImageType *_arg, unsigned int pos)
virtual void SetMovingImage (const MovingImageType *_arg)
virtual void SetMovingImageMask (MovingImageMaskType *_arg, unsigned int pos)
virtual void SetMovingImageMask (MovingImageMaskType *_arg)
- Public Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual const
FixedImageLimiterType
GetFixedImageLimiter ()
virtual double GetFixedLimitRangeRatio () const
virtual ImageSamplerTypeGetImageSampler (void) const
virtual const
MovingImageDerivativeScalesType
GetMovingImageDerivativeScales ()
virtual const
MovingImageLimiterType
GetMovingImageLimiter ()
virtual double GetMovingLimitRangeRatio () const
virtual double GetRequiredRatioOfValidSamples () const
virtual void GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
const AdvancedTransformTypeGetTransform (void) const
virtual bool GetUseFixedImageLimiter () const
virtual bool GetUseImageSampler () const
virtual bool GetUseMovingImageDerivativeScales () const
virtual bool GetUseMovingImageLimiter () const
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
virtual void SetFixedLimitRangeRatio (double _arg)
virtual void SetImageSampler (ImageSamplerType *_arg)
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
virtual void SetMovingLimitRangeRatio (double _arg)
virtual void SetRequiredRatioOfValidSamples (double _arg)
virtual void SetTransform (AdvancedTransformType *arg)
virtual void SetUseMovingImageDerivativeScales (bool _arg)
- Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void AfterEachIterationBase (void)
virtual void BeforeEachResolutionBase (void)
virtual ImageSamplerBaseTypeGetAdvancedMetricImageSampler (void) const
virtual bool GetAdvancedMetricUseImageSampler (void) const
virtual ITKBaseTypeGetAsITKBaseType (void)
virtual const ITKBaseTypeGetAsITKBaseType (void) const
virtual MeasureType GetCurrentExactMetricValue (void) const
virtual bool GetShowExactMetricValue (void) const
virtual void SelectNewSamples (void)
virtual void SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
virtual ElastixTypeGetElastix (void) const
virtual RegistrationPointer GetRegistration (void) const
virtual void SetConfiguration (ConfigurationType *_arg)
virtual void SetElastix (ElastixType *_arg)
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration (void)
virtual void AfterEachResolution (void)
virtual void AfterEachResolutionBase (void)
virtual void AfterRegistration (void)
virtual void AfterRegistrationBase (void)
virtual int BeforeAll (void)
virtual int BeforeAllBase (void)
virtual void BeforeRegistrationBase (void)
virtual const char * elxGetClassName (void) const
virtual const char * GetComponentLabel (void) const
virtual void SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions

static Pointer New ()

Protected Member Functions

 KNNGraphAlphaMutualInformationMetric ()
virtual ~KNNGraphAlphaMutualInformationMetric ()
- Protected Member Functions inherited from itk::KNNGraphAlphaMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
 KNNGraphAlphaMutualInformationImageToImageMetric ()
virtual void PrintSelf (std::ostream &os, Indent indent) const
virtual ~KNNGraphAlphaMutualInformationImageToImageMetric ()
- Protected Member Functions inherited from itk::MultiInputImageToImageMetricBase< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual void CheckForBSplineInterpolators (void)
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
virtual void InitializeImageSampler (void) throw ( ExceptionObject )
virtual bool IsInsideMovingMask (const MovingImagePointType &mappedPoint) const
 MultiInputImageToImageMetricBase ()
virtual ~MultiInputImageToImageMetricBase ()
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
 AdvancedImageToImageMetric ()
virtual void CheckForAdvancedTransform (void)
virtual void CheckForBSplineInterpolator (void)
virtual void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
virtual void ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType &region)
virtual void ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType &region)
virtual bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
virtual void InitializeLimiters (void)
virtual void SetUseFixedImageLimiter (bool _arg)
virtual void SetUseImageSampler (bool _arg)
virtual void SetUseMovingImageLimiter (bool _arg)
virtual bool TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
virtual ~AdvancedImageToImageMetric ()
- Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType GetExactValue (const ParametersType &parameters)
 MetricBase ()
virtual ~MetricBase ()
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
virtual ~BaseComponentSE ()
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
virtual ~BaseComponent ()

Private Member Functions

 KNNGraphAlphaMutualInformationMetric (const Self &)
void operator= (const Self &)

Additional Inherited Members

- Protected Types inherited from itk::MultiInputImageToImageMetricBase< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef
BSplineInterpolatorType::Pointer 
BSplineInterpolatorPointer
typedef
Superclass::BSplineInterpolatorType 
BSplineInterpolatorType
typedef std::vector
< BSplineInterpolatorPointer
BSplineInterpolatorVectorType
typedef
Superclass::MovingImageContinuousIndexType 
MovingImageContinuousIndexType
typedef
Superclass::MovingImageDerivativeType 
MovingImageDerivativeType
typedef
Superclass::MovingImageIndexType 
MovingImageIndexType
typedef
Superclass::MovingImagePointType 
MovingImagePointType
- Protected Types inherited from elastix::MetricBase< TElastix >
typedef itk::ImageGridSampler
< FixedImageType
ExactMetricImageSamplerType
typedef
ExactMetricImageSamplerType::SampleGridSpacingType 
ExactMetricSampleGridSpacingType
typedef ITKBaseType::ParametersType ParametersType
- Protected Attributes inherited from itk::KNNGraphAlphaMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
double m_Alpha
double m_AvoidDivisionBy
BinaryKNNTreeType::Pointer m_BinaryKNNTreeFixed
BinaryKNNTreeType::Pointer m_BinaryKNNTreeJoint
BinaryKNNTreeType::Pointer m_BinaryKNNTreeMoving
BinaryKNNTreeSearchType::Pointer m_BinaryKNNTreeSearcherFixed
BinaryKNNTreeSearchType::Pointer m_BinaryKNNTreeSearcherJoint
BinaryKNNTreeSearchType::Pointer m_BinaryKNNTreeSearcherMoving
- Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType m_CurrentExactMetricValue
ExactMetricSampleGridSpacingType m_ExactMetricSampleGridSpacing
ExactMetricImageSamplerType::Pointer m_ExactMetricSampler
bool m_ShowExactMetricValue

Detailed Description

template<class TElastix>
class elastix::KNNGraphAlphaMutualInformationMetric< TElastix >

A metric based on the itk::KNNGraphAlphaMutualInformationImageToImageMetric.

The parameters used in this class are:

Parameters:
Metric: Select this metric as follows:
(Metric "KNNGraphAlphaMutualInformation")
Parameters:
Alpha: since this metric calculates alpha - mutual information.
(Alpha 0.5)
Choose a value between 0.0 and 1.0. The default is 0.5.
Parameters:
TreeType: The type of the kNN binary tree.
(TreeType "BDTree" "BruteForceTree")
Choose one of { KDTree, BDTree, BruteForceTree }.
The default is "KDTree" for all resolutions.
Parameters:
BucketSize: The maximum number of samples in one bucket.
This parameter influences the calculation time only, and is not appropiate for the BruteForceTree.
(BucketSize 5 100 50)
The default is 50 for all resolutions.
Parameters:
SplittingRule: This rule defines how the feature space is split.
(SplittingRule "ANN_KD_STD" "ANN_KD_FAIR")
Choose one of { ANN_KD_STD, ANN_KD_MIDPT, ANN_KD_SL_MIDPT, ANN_KD_FAIR, ANN_KD_SL_FAIR, ANN_KD_SUGGEST }
The default is "ANN_KD_SL_MIDPT" for all resolutions.
Parameters:
ShrinkingRule: This rule defines how the feature space is shrinked.
(ShrinkingRule "ANN_BD_CENTROID" "ANN_BD_NONE")
Choose one of { ANN_BD_NONE, ANN_BD_SIMPLE, ANN_BD_CENTROID, ANN_BD_SUGGEST }
The default is "ANN_BD_SIMPLE" for all resolutions.
Parameters:
TreeSearchType: The type of the binary tree searcher.
(TreeSearchType "Standard" "FixedRadius")
Choose one of { Standard, FixedRadius, Priority }
The default is "Standard" for all resolutions.
Parameters:
KNearestNeighbours: The number of nearest neighbours to be searched.
(KNearestNeighbours 50 20 35)
The default is 20 for all resolutions.
Parameters:
ErrorBound: error accepted in finding the nearest neighbours.
An ErrorBound of 0.0 equals exact searching, higher error bounds should result in smaller computation times.
(ErrorBound 32.0 8.0 0.0)
The default is 0.0 for all resolutions.
Parameters:
SquaredSearchRadius: the radius of the sphere where there is searched for neighbours.
This option is only appropiate for FixedRadius search.
(SquaredSearchRadius 32.0 8.0 8.0)
The default is 0.0 for all resolutions, which means no radius.
Parameters:
AvoidDivisionBy: a small number to avoid division by zero in the implentation.
(AvoidDivisionBy 0.000000001)
The default is 1e-5.
Warning
Note that we assume the FixedFeatureImageType to have the same pixeltype as the FixedImageType
See Also
KNNGraphAlphaMutualInformationImageToImageMetric, ParzenWindowMutualInformationImageToImageMetric

Definition at line 82 of file elxKNNGraphAlphaMutualInformationMetric.h.

Member Typedef Documentation

Definition at line 137 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 136 of file elxKNNGraphAlphaMutualInformationMetric.h.

template<class TElastix >
typedef SmartPointer<const Self> elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::ConstPointer

Definition at line 98 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 119 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 135 of file elxKNNGraphAlphaMutualInformationMetric.h.

Typedef's inherited from Elastix.

Definition at line 134 of file elxKNNGraphAlphaMutualInformationMetric.h.

Typedefs for feature images.

Definition at line 143 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 123 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 121 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 117 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 140 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 118 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 144 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 124 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 122 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 120 of file elxKNNGraphAlphaMutualInformationMetric.h.

template<class TElastix >
typedef SmartPointer<Self> elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::Pointer

Definition at line 97 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 139 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 138 of file elxKNNGraphAlphaMutualInformationMetric.h.

Standard ITK-stuff.

Definition at line 92 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 95 of file elxKNNGraphAlphaMutualInformationMetric.h.

template<class TElastix >
typedef MetricBase<TElastix> elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::Superclass2

Definition at line 96 of file elxKNNGraphAlphaMutualInformationMetric.h.

template<class TElastix >
typedef TimerType::Pointer elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::TimerPointer

Typedef for timer.

Definition at line 149 of file elxKNNGraphAlphaMutualInformationMetric.h.

template<class TElastix >
typedef tmr::Timer elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::TimerType

Typedef for timer.

Definition at line 147 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 116 of file elxKNNGraphAlphaMutualInformationMetric.h.

Definition at line 115 of file elxKNNGraphAlphaMutualInformationMetric.h.

Typedefs inherited from the superclass.

Definition at line 114 of file elxKNNGraphAlphaMutualInformationMetric.h.

Constructor & Destructor Documentation

template<class TElastix >
elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::KNNGraphAlphaMutualInformationMetric ( )
inlineprotected

The constructor.

Definition at line 182 of file elxKNNGraphAlphaMutualInformationMetric.h.

template<class TElastix >
virtual elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::~KNNGraphAlphaMutualInformationMetric ( )
inlineprotectedvirtual

The destructor.

Definition at line 184 of file elxKNNGraphAlphaMutualInformationMetric.h.

template<class TElastix >
elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::KNNGraphAlphaMutualInformationMetric ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual void elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::BeforeEachResolution ( void  )
virtual

Execute stuff before each new pyramid resolution:

  • Set the tree type.
  • Set the bucket size, if appropiate.
  • Set the splitting rule, if appropiate.
  • Set the shrinking rule, if appropiate.
  • Set the tree searcher type.
  • Set the k NearestNeighbours.
  • Set the error bound epsilon for ANN search.
  • Set the squared search radius, if appropiate.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::BeforeRegistration ( void  )
virtual

Execute stuff before the registration:

  • Set the alpha from alpha - MI.
  • Set the number of fixed feature images.
  • Set the number of moving feature images.
  • Set the fixed feature images filenames.
  • Set the moving feature images filenames.
  • Set the spline orders of the fixed feature interpolators.
  • Set the spline orders of the moving feature interpolators.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::elxClassNameMacro ( "KNNGraphAlphaMutualInformation"  )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "KNNGraphAlphaMutualInformation")

template<class TElastix >
virtual const char* elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
virtual void elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::Initialize ( void  ) throw (ExceptionObject)
virtual

Sets up a timer to measure the intialisation time and calls the Superclass' implementation.

Reimplemented from itk::KNNGraphAlphaMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >.

template<class TElastix >
elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)

The moving image dimension.

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
static Pointer elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::New ( )
static
template<class TElastix >
void elastix::KNNGraphAlphaMutualInformationMetric< TElastix >::operator= ( const Self )
private

The private copy constructor.



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