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elastix::VarianceOverLastDimensionMetric< TElastix > Class Template Reference

#include <elxVarianceOverLastDimensionMetric.h>

Inheritance diagram for elastix::VarianceOverLastDimensionMetric< TElastix >:
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Public Types

typedef
AdvancedBSplineDeformableTransformBase
< ScalarType,
FixedImageDimension > 
BSplineTransformBaseType
typedef
AdvancedCombinationTransform
< ScalarType,
FixedImageDimension > 
CombinationTransformType
typedef
Superclass2::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass2::ConfigurationType 
ConfigurationType
typedef SmartPointer< const SelfConstPointer
typedef
Superclass1::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass1::DerivativeType DerivativeType
typedef Superclass2::ElastixPointer ElastixPointer
typedef Superclass2::ElastixType ElastixType
typedef
Superclass1::FixedImageConstPointer 
FixedImageConstPointer
typedef
Superclass1::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
typedef
Superclass1::FixedImageLimiterType 
FixedImageLimiterType
typedef
Superclass1::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass1::FixedImageMaskType 
FixedImageMaskType
typedef
Superclass1::FixedImagePixelType 
FixedImagePixelType
typedef
Superclass1::FixedImageRegionType 
FixedImageRegionType
typedef
Superclass1::FixedImageSizeType 
FixedImageSizeType
typedef Superclass1::FixedImageType FixedImageType
typedef
Superclass1::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass1::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass1::GradientImagePointer 
GradientImagePointer
typedef
Superclass1::GradientImageType 
GradientImageType
typedef
Superclass1::GradientPixelType 
GradientPixelType
typedef
Superclass1::ImageSampleContainerPointer 
ImageSampleContainerPointer
typedef
Superclass1::ImageSampleContainerType 
ImageSampleContainerType
typedef
Superclass1::ImageSamplerPointer 
ImageSamplerPointer
typedef
Superclass1::ImageSamplerType 
ImageSamplerType
typedef Superclass1::InputPointType InputPointType
typedef
Superclass1::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass1::InterpolatorType 
InterpolatorType
typedef Superclass2::ITKBaseType ITKBaseType
typedef Superclass1::MeasureType MeasureType
typedef
Superclass1::MovingImageConstPointer 
MovingImageConstPointer
typedef
Superclass1::MovingImageDerivativeScalesType 
MovingImageDerivativeScalesType
typedef
Superclass1::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
typedef
Superclass1::MovingImageLimiterType 
MovingImageLimiterType
typedef
Superclass1::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass1::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass1::MovingImagePixelType 
MovingImagePixelType
typedef
Superclass1::MovingImageRegionType 
MovingImageRegionType
typedef
Superclass1::MovingImageType 
MovingImageType
typedef
Superclass1::OutputPointType 
OutputPointType
typedef Superclass1::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass1::RealType RealType
typedef
AdvancedBSplineDeformableTransformBase
< ScalarType,
FixedImageDimension-1 > 
ReducedDimensionBSplineTransformBaseType
typedef
Superclass2::RegistrationPointer 
RegistrationPointer
typedef
Superclass2::RegistrationType 
RegistrationType
typedef Superclass1::ScalarType ScalarType
typedef
VarianceOverLastDimensionMetric 
Self
typedef StackTransform
< ScalarType,
FixedImageDimension,
MovingImageDimension > 
StackTransformType
typedef
VarianceOverLastDimensionImageMetric
< typename MetricBase
< TElastix >::FixedImageType,
typename MetricBase< TElastix >
::MovingImageType
Superclass1
typedef MetricBase< TElastix > Superclass2
typedef TimerType::Pointer TimerPointer
typedef tmr::Timer TimerType
typedef
Superclass1::TransformJacobianType 
TransformJacobianType
typedef
Superclass1::TransformParametersType 
TransformParametersType
typedef
Superclass1::TransformPointer 
TransformPointer
typedef Superclass1::TransformType TransformType
- Public Types inherited from itk::VarianceOverLastDimensionImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass::DerivativeType DerivativeType
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
typedef
Superclass::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
typedef
Superclass::FixedImageLimiterType 
FixedImageLimiterType
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
typedef
FixedImageRegionType::SizeType 
FixedImageSizeType
typedef Superclass::FixedImageType FixedImageType
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass::GradientImagePointer 
GradientImagePointer
typedef
Superclass::GradientImageType 
GradientImageType
typedef
Superclass::GradientPixelType 
GradientPixelType
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
typedef
Superclass::ImageSamplerPointer 
ImageSamplerPointer
typedef
Superclass::ImageSamplerType 
ImageSamplerType
typedef Superclass::InputPointType InputPointType
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass::InterpolatorType 
InterpolatorType
typedef Superclass::MeasureType MeasureType
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
typedef
Superclass::MovingImageDerivativeScalesType 
MovingImageDerivativeScalesType
typedef
Superclass::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
typedef
Superclass::MovingImageLimiterType 
MovingImageLimiterType
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
typedef
Superclass::MovingImageRegionType 
MovingImageRegionType
typedef Superclass::MovingImageType MovingImageType
typedef Superclass::OutputPointType OutputPointType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::RealType RealType
typedef
VarianceOverLastDimensionImageMetric 
Self
typedef
AdvancedImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::MovingImageType
Superclass
typedef
Superclass::TransformJacobianType 
TransformJacobianType
typedef
Superclass::TransformParametersType 
TransformParametersType
typedef
Superclass::TransformPointer 
TransformPointer
typedef Superclass::TransformType TransformType
- Public Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef AdvancedTransform
< ScalarType,
FixedImageDimension,
MovingImageDimension > 
AdvancedTransformType
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass::DerivativeType DerivativeType
typedef DerivativeType::ValueType DerivativeValueType
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
typedef
FixedImageLimiterType::OutputType 
FixedImageLimiterOutputType
typedef LimiterFunctionBase
< RealType,
FixedImageDimension > 
FixedImageLimiterType
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
typedef FixedImageType::PixelType FixedImagePixelType
typedef FixedImageType::Pointer FixedImagePointer
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
typedef Superclass::FixedImageType FixedImageType
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass::GradientImagePointer 
GradientImagePointer
typedef
Superclass::GradientImageType 
GradientImageType
typedef
Superclass::GradientPixelType 
GradientPixelType
typedef vnl_sparse_matrix
< HessianValueType
HessianType
typedef DerivativeType::ValueType HessianValueType
typedef
ImageSamplerType::OutputVectorContainerPointer 
ImageSampleContainerPointer
typedef
ImageSamplerType::OutputVectorContainerType 
ImageSampleContainerType
typedef ImageSamplerType::Pointer ImageSamplerPointer
typedef ImageSamplerBase
< FixedImageType
ImageSamplerType
typedef Superclass::InputPointType InputPointType
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass::InterpolatorType 
InterpolatorType
typedef Superclass::MeasureType MeasureType
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
typedef FixedArray< double,
itkGetStaticConstMacro(MovingImageDimension) > 
MovingImageDerivativeScalesType
typedef
MovingImageLimiterType::OutputType 
MovingImageLimiterOutputType
typedef LimiterFunctionBase
< RealType,
MovingImageDimension > 
MovingImageLimiterType
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
typedef MovingImageType::Pointer MovingImagePointer
typedef MovingImageType::RegionType MovingImageRegionType
typedef Superclass::MovingImageType MovingImageType
typedef Superclass::OutputPointType OutputPointType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::RealType RealType
typedef TransformType::ScalarType ScalarType
typedef AdvancedImageToImageMetric Self
typedef ImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::MovingImageType
Superclass
typedef
Superclass::TransformJacobianType 
TransformJacobianType
typedef
Superclass::TransformParametersType 
TransformParametersType
typedef
Superclass::TransformPointer 
TransformPointer
typedef Superclass::TransformType TransformType
- Public Types inherited from elastix::MetricBase< TElastix >
typedef
AdvancedImageToImageMetric
< FixedImageType,
MovingImageType
AdvancedMetricType
typedef
Superclass::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass::ConfigurationType 
ConfigurationType
typedef
ITKBaseType::ParametersValueType 
CoordinateRepresentationType
typedef Superclass::ElastixPointer ElastixPointer
typedef Superclass::ElastixType ElastixType
typedef ElastixType::FixedImageType FixedImageType
typedef PointSet
< CoordinateRepresentationType,
FixedImageDimension,
DefaultStaticMeshTraits
< CoordinateRepresentationType,
FixedImageDimension,
FixedImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
FixedPointSetType
typedef FixedImageType::PointType FixedPointType
typedef FixedPointType::ValueType FixedPointValueType
typedef
AdvancedMetricType::ImageSamplerType 
ImageSamplerBaseType
typedef SingleValuedCostFunction ITKBaseType
typedef ITKBaseType::MeasureType MeasureType
typedef
ElastixType::MovingImageType 
MovingImageType
typedef PointSet
< CoordinateRepresentationType,
MovingImageDimension,
DefaultStaticMeshTraits
< CoordinateRepresentationType,
MovingImageDimension,
MovingImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
MovingPointSetType
typedef MovingImageType::PointType MovingPointType
typedef MovingPointType::ValueType MovingPointValueType
typedef
Superclass::RegistrationPointer 
RegistrationPointer
typedef
Superclass::RegistrationType 
RegistrationType
typedef MetricBase Self
typedef BaseComponentSE< TElastix > Superclass
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef
ElastixType::ConfigurationPointer 
ConfigurationPointer
typedef
ElastixType::ConfigurationType 
ConfigurationType
typedef ElastixType::Pointer ElastixPointer
typedef TElastix ElastixType
typedef RegistrationTypeRegistrationPointer
typedef
ElastixType::RegistrationBaseType 
RegistrationType
typedef BaseComponentSE Self
typedef BaseComponent Superclass

Public Member Functions

virtual void BeforeEachResolution (void)
 elxClassNameMacro ("VarianceOverLastDimensionMetric")
virtual const char * GetClassName () const
virtual void Initialize (void) throw (ExceptionObject)
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
- Public Member Functions inherited from itk::VarianceOverLastDimensionImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual void GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const
virtual int GetNumSamplesLastDimension () const
virtual bool GetSampleLastDimensionRandomly () const
virtual MeasureType GetValue (const TransformParametersType &parameters) const
virtual void GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const
virtual void SetGridSize (FixedImageSizeType _arg)
virtual void SetNumAdditionalSamplesFixed (unsigned int _arg)
virtual void SetNumSamplesLastDimension (unsigned int _arg)
virtual void SetReducedDimensionIndex (unsigned int _arg)
virtual void SetSampleLastDimensionRandomly (bool _arg)
virtual void SetSubtractMean (bool _arg)
virtual void SetTransformIsStackTransform (bool _arg)
- Public Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual const
FixedImageLimiterType
GetFixedImageLimiter ()
virtual double GetFixedLimitRangeRatio () const
virtual ImageSamplerTypeGetImageSampler (void) const
virtual const
MovingImageDerivativeScalesType
GetMovingImageDerivativeScales ()
virtual const
MovingImageLimiterType
GetMovingImageLimiter ()
virtual double GetMovingLimitRangeRatio () const
virtual double GetRequiredRatioOfValidSamples () const
virtual void GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
const AdvancedTransformTypeGetTransform (void) const
virtual bool GetUseFixedImageLimiter () const
virtual bool GetUseImageSampler () const
virtual bool GetUseMovingImageDerivativeScales () const
virtual bool GetUseMovingImageLimiter () const
 itkStaticConstMacro (MovingImageDimension, unsigned int, MetricBase< TElastix >::MovingImageType::ImageDimension)
 itkStaticConstMacro (FixedImageDimension, unsigned int, MetricBase< TElastix >::FixedImageType::ImageDimension)
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
virtual void SetFixedLimitRangeRatio (double _arg)
virtual void SetImageSampler (ImageSamplerType *_arg)
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
virtual void SetMovingLimitRangeRatio (double _arg)
virtual void SetRequiredRatioOfValidSamples (double _arg)
virtual void SetTransform (AdvancedTransformType *arg)
virtual void SetUseMovingImageDerivativeScales (bool _arg)
- Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void AfterEachIterationBase (void)
virtual void BeforeEachResolutionBase (void)
virtual ImageSamplerBaseTypeGetAdvancedMetricImageSampler (void) const
virtual bool GetAdvancedMetricUseImageSampler (void) const
virtual ITKBaseTypeGetAsITKBaseType (void)
virtual const ITKBaseTypeGetAsITKBaseType (void) const
virtual MeasureType GetCurrentExactMetricValue (void) const
virtual bool GetShowExactMetricValue (void) const
virtual void SelectNewSamples (void)
virtual void SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
virtual ElastixTypeGetElastix (void) const
virtual RegistrationPointer GetRegistration (void) const
virtual void SetConfiguration (ConfigurationType *_arg)
virtual void SetElastix (ElastixType *_arg)
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration (void)
virtual void AfterEachResolution (void)
virtual void AfterEachResolutionBase (void)
virtual void AfterRegistration (void)
virtual void AfterRegistrationBase (void)
virtual int BeforeAll (void)
virtual int BeforeAllBase (void)
virtual void BeforeRegistration (void)
virtual void BeforeRegistrationBase (void)
virtual const char * elxGetClassName (void) const
virtual const char * GetComponentLabel (void) const
virtual void SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions

static Pointer New ()

Protected Member Functions

 VarianceOverLastDimensionMetric ()
virtual ~VarianceOverLastDimensionMetric ()
- Protected Member Functions inherited from itk::VarianceOverLastDimensionImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
void EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
void PrintSelf (std::ostream &os, Indent indent) const
 VarianceOverLastDimensionImageMetric ()
virtual ~VarianceOverLastDimensionImageMetric ()
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
 AdvancedImageToImageMetric ()
virtual void CheckForAdvancedTransform (void)
virtual void CheckForBSplineInterpolator (void)
virtual void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
virtual void ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType &region)
virtual void ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType &region)
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
virtual bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
virtual void InitializeImageSampler (void) throw ( ExceptionObject )
virtual void InitializeLimiters (void)
virtual bool IsInsideMovingMask (const MovingImagePointType &point) const
virtual void SetUseFixedImageLimiter (bool _arg)
virtual void SetUseImageSampler (bool _arg)
virtual void SetUseMovingImageLimiter (bool _arg)
virtual bool TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
virtual ~AdvancedImageToImageMetric ()
- Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType GetExactValue (const ParametersType &parameters)
 MetricBase ()
virtual ~MetricBase ()
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
virtual ~BaseComponentSE ()
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
virtual ~BaseComponent ()

Private Member Functions

void operator= (const Self &)
 VarianceOverLastDimensionMetric (const Self &)

Additional Inherited Members

- Protected Types inherited from itk::VarianceOverLastDimensionImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef
Superclass::BSplineInterpolatorType 
BSplineInterpolatorType
typedef
Superclass::CentralDifferenceGradientFilterType 
CentralDifferenceGradientFilterType
typedef itk::ContinuousIndex
< CoordinateRepresentationType,
FixedImageDimension > 
FixedImageContinuousIndexType
typedef
Superclass::FixedImageIndexType 
FixedImageIndexType
typedef
Superclass::FixedImageIndexValueType 
FixedImageIndexValueType
typedef
Superclass::FixedImagePointType 
FixedImagePointType
typedef
Superclass::MovingImageContinuousIndexType 
MovingImageContinuousIndexType
typedef
Superclass::MovingImageDerivativeType 
MovingImageDerivativeType
typedef
Superclass::MovingImageIndexType 
MovingImageIndexType
typedef
Superclass::MovingImagePointType 
MovingImagePointType
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
- Protected Types inherited from elastix::MetricBase< TElastix >
typedef itk::ImageGridSampler
< FixedImageType
ExactMetricImageSamplerType
typedef
ExactMetricImageSamplerType::SampleGridSpacingType 
ExactMetricSampleGridSpacingType
typedef ITKBaseType::ParametersType ParametersType
- Protected Attributes inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
AdvancedTransformType::Pointer m_AdvancedTransform
BSplineInterpolatorType::Pointer m_BSplineInterpolator
BSplineInterpolatorFloatType::Pointer m_BSplineInterpolatorFloat
CentralDifferenceGradientFilterType::Pointer m_CentralDifferenceGradientFilter
FixedImageLimiterType::Pointer m_FixedImageLimiter
FixedImageLimiterOutputType m_FixedImageMaxLimit
FixedImageLimiterOutputType m_FixedImageMinLimit
FixedImagePixelType m_FixedImageTrueMax
FixedImagePixelType m_FixedImageTrueMin
ImageSamplerPointer m_ImageSampler
bool m_InterpolatorIsBSpline
bool m_InterpolatorIsBSplineFloat
bool m_InterpolatorIsReducedBSpline
MovingImageLimiterType::Pointer m_MovingImageLimiter
MovingImageLimiterOutputType m_MovingImageMaxLimit
MovingImageLimiterOutputType m_MovingImageMinLimit
MovingImagePixelType m_MovingImageTrueMax
MovingImagePixelType m_MovingImageTrueMin
ReducedBSplineInterpolatorType::Pointer m_ReducedBSplineInterpolator
bool m_TransformIsAdvanced
- Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType m_CurrentExactMetricValue
ExactMetricSampleGridSpacingType m_ExactMetricSampleGridSpacing
ExactMetricImageSamplerType::Pointer m_ExactMetricSampler
bool m_ShowExactMetricValue

Detailed Description

template<class TElastix>
class elastix::VarianceOverLastDimensionMetric< TElastix >

Compute the sum of variances over the slowest varying dimension in the moving image.

For a description of this metric see the paper:
Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press.

This metric is based on the AdvancedImageToImageMetric. It is templated over the type of the fixed and moving images to be compared.

This metric computes the sum of variances over the slowest varying dimension in the moving image. The spatial positions of the moving image are established through a Transform. Pixel values are taken from the Moving image.

This implementation is based on the AdvancedImageToImageMetric, which means that:

Parameters:
SampleLastDimensionRandomly: randomly sample a number of time points to to compute the variance from. When set to "false", all time points are taken into account. When set to "true", a random number of time points is selected, which can be set with parameter NumSamplesLastDimension.
Parameters:
NumSamplesLastDimension: the number of random samples to take in the time time direction of the data when SampleLastDimensionRandomly is set to true.
Parameters:
SubtractMean: subtract the over time computed mean parameter value from each parameter. This should be used when registration is performed directly on the moving image, without using a fixed image. Possible values are "true" or "false".

Definition at line 67 of file elxVarianceOverLastDimensionMetric.h.

Member Typedef Documentation

template<class TElastix >
typedef AdvancedBSplineDeformableTransformBase< ScalarType, FixedImageDimension > elastix::VarianceOverLastDimensionMetric< TElastix >::BSplineTransformBaseType

Typedef's for the B-spline transform.

Definition at line 164 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
typedef AdvancedCombinationTransform< ScalarType, FixedImageDimension > elastix::VarianceOverLastDimensionMetric< TElastix >::CombinationTransformType

Definition at line 166 of file elxVarianceOverLastDimensionMetric.h.

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Definition at line 156 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
typedef SmartPointer<const Self> elastix::VarianceOverLastDimensionMetric< TElastix >::ConstPointer

Definition at line 83 of file elxVarianceOverLastDimensionMetric.h.

Typedefs from the superclass.

Definition at line 99 of file elxVarianceOverLastDimensionMetric.h.

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Definition at line 155 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
typedef Superclass2::ElastixType elastix::VarianceOverLastDimensionMetric< TElastix >::ElastixType

Typedef's inherited from Elastix.

Definition at line 154 of file elxVarianceOverLastDimensionMetric.h.

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template<class TElastix >
typedef Superclass2::ITKBaseType elastix::VarianceOverLastDimensionMetric< TElastix >::ITKBaseType

Definition at line 160 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
typedef Superclass1::MeasureType elastix::VarianceOverLastDimensionMetric< TElastix >::MeasureType

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template<class TElastix >
typedef SmartPointer<Self> elastix::VarianceOverLastDimensionMetric< TElastix >::Pointer

Definition at line 82 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
typedef Superclass1::RealType elastix::VarianceOverLastDimensionMetric< TElastix >::RealType

Definition at line 116 of file elxVarianceOverLastDimensionMetric.h.

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template<class TElastix >
typedef Superclass1::ScalarType elastix::VarianceOverLastDimensionMetric< TElastix >::ScalarType

Definition at line 100 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
typedef VarianceOverLastDimensionMetric elastix::VarianceOverLastDimensionMetric< TElastix >::Self

Standard ITK-stuff.

Definition at line 77 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
typedef StackTransform< ScalarType, FixedImageDimension, MovingImageDimension > elastix::VarianceOverLastDimensionMetric< TElastix >::StackTransformType

Definition at line 168 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
typedef VarianceOverLastDimensionImageMetric< typename MetricBase<TElastix>::FixedImageType, typename MetricBase<TElastix>::MovingImageType > elastix::VarianceOverLastDimensionMetric< TElastix >::Superclass1

Definition at line 80 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
typedef MetricBase<TElastix> elastix::VarianceOverLastDimensionMetric< TElastix >::Superclass2

Definition at line 81 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
typedef TimerType::Pointer elastix::VarianceOverLastDimensionMetric< TElastix >::TimerPointer

Typedef for timer.

Definition at line 175 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
typedef tmr::Timer elastix::VarianceOverLastDimensionMetric< TElastix >::TimerType

Typedef for timer.

Definition at line 173 of file elxVarianceOverLastDimensionMetric.h.

Definition at line 113 of file elxVarianceOverLastDimensionMetric.h.

Definition at line 112 of file elxVarianceOverLastDimensionMetric.h.

Definition at line 109 of file elxVarianceOverLastDimensionMetric.h.

Definition at line 108 of file elxVarianceOverLastDimensionMetric.h.

Constructor & Destructor Documentation

template<class TElastix >
elastix::VarianceOverLastDimensionMetric< TElastix >::VarianceOverLastDimensionMetric ( )
inlineprotected

The constructor.

Definition at line 192 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
virtual elastix::VarianceOverLastDimensionMetric< TElastix >::~VarianceOverLastDimensionMetric ( )
inlineprotectedvirtual

The destructor.

Definition at line 194 of file elxVarianceOverLastDimensionMetric.h.

template<class TElastix >
elastix::VarianceOverLastDimensionMetric< TElastix >::VarianceOverLastDimensionMetric ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual void elastix::VarianceOverLastDimensionMetric< TElastix >::BeforeEachResolution ( void  )
virtual

Do some things before each resolution:

  • Set CheckNumberOfSamples setting
  • Set UseNormalization setting

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::VarianceOverLastDimensionMetric< TElastix >::elxClassNameMacro ( "VarianceOverLastDimensionMetric< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "VarianceOverLastDimensionMetric")

template<class TElastix >
virtual const char* elastix::VarianceOverLastDimensionMetric< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
virtual void elastix::VarianceOverLastDimensionMetric< TElastix >::Initialize ( void  ) throw (ExceptionObject)
virtual

Sets up a timer to measure the initialisation time and calls the Superclass' implementation.

Reimplemented from itk::VarianceOverLastDimensionImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >.

template<class TElastix >
elastix::VarianceOverLastDimensionMetric< TElastix >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension.

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
elastix::VarianceOverLastDimensionMetric< TElastix >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)

The moving image dimension.

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
static Pointer elastix::VarianceOverLastDimensionMetric< TElastix >::New ( )
static
template<class TElastix >
void elastix::VarianceOverLastDimensionMetric< TElastix >::operator= ( const Self )
private

The private copy constructor.



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