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elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix > Class Template Reference

#include <elxCorrespondingPointsEuclideanDistanceMetric.h>

Inheritance diagram for elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >:
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Collaboration diagram for elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >:
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Public Types

typedef
Superclass2::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass2::ConfigurationType 
ConfigurationType
typedef SmartPointer< const SelfConstPointer
typedef
Superclass1::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass1::DerivativeType DerivativeType
typedef Superclass2::ElastixPointer ElastixPointer
typedef Superclass2::ElastixType ElastixType
typedef
Superclass1::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass1::FixedImageMaskType 
FixedImageMaskType
typedef Superclass2::FixedImageType FixedImageType
typedef
Superclass1::FixedPointSetConstPointer 
FixedPointSetConstPointer
typedef
Superclass1::FixedPointSetType 
FixedPointSetType
typedef FixedImageType ImageType
typedef Superclass1::InputPointType InputPointType
typedef Superclass2::ITKBaseType ITKBaseType
typedef Superclass1::MeasureType MeasureType
typedef
Superclass1::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass1::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass2::MovingImageType 
MovingImageType
typedef
Superclass1::MovingPointSetConstPointer 
MovingPointSetConstPointer
typedef
Superclass1::MovingPointSetType 
MovingPointSetType
typedef
Superclass1::OutputPointType 
OutputPointType
typedef Superclass1::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef FixedPointSetType PointSetType
typedef
Superclass2::RegistrationPointer 
RegistrationPointer
typedef
Superclass2::RegistrationType 
RegistrationType
typedef
CorrespondingPointsEuclideanDistanceMetric 
Self
typedef
CorrespondingPointsEuclideanDistancePointMetric
< typename MetricBase
< TElastix >
::FixedPointSetType, typename
MetricBase< TElastix >
::MovingPointSetType
Superclass1
typedef MetricBase< TElastix > Superclass2
typedef TimerType::Pointer TimerPointer
typedef tmr::Timer TimerType
typedef
Superclass1::TransformJacobianType 
TransformJacobianType
typedef
Superclass1::TransformParametersType 
TransformParametersType
typedef
Superclass1::TransformPointer 
TransformPointer
typedef Superclass1::TransformType TransformType
- Public Types inherited from itk::CorrespondingPointsEuclideanDistancePointMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
typedef SmartPointer< const SelfConstPointer
typedef
OutputPointType::CoordRepType 
CoordRepType
typedef Superclass::DerivativeType DerivativeType
typedef
Superclass::DerivativeValueType 
DerivativeValueType
typedef
Superclass::FixedPointSetConstPointer 
FixedPointSetConstPointer
typedef
Superclass::FixedPointSetType 
FixedPointSetType
typedef Superclass::InputPointType InputPointType
typedef Superclass::MeasureType MeasureType
typedef
Superclass::MovingPointSetConstPointer 
MovingPointSetConstPointer
typedef
Superclass::MovingPointSetType 
MovingPointSetType
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
typedef Superclass::OutputPointType OutputPointType
typedef
Superclass::PointDataIterator 
PointDataIterator
typedef SmartPointer< SelfPointer
typedef Superclass::PointIterator PointIterator
typedef
CorrespondingPointsEuclideanDistancePointMetric 
Self
typedef
SingleValuedPointSetToPointSetMetric
< MetricBase< TElastix >
::FixedPointSetType,
MetricBase< TElastix >
::MovingPointSetType
Superclass
typedef
Superclass::TransformJacobianType 
TransformJacobianType
typedef
Superclass::TransformParametersType 
TransformParametersType
typedef
Superclass::TransformPointer 
TransformPointer
typedef Superclass::TransformType TransformType
typedef vnl_vector< CoordRepTypeVnlVectorType
- Public Types inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::ParametersValueType 
CoordinateRepresentationType
typedef Superclass::DerivativeType DerivativeType
typedef DerivativeType::ValueType DerivativeValueType
typedef
FixedImageMaskType::ConstPointer 
FixedImageMaskConstPointer
typedef FixedImageMaskType::Pointer FixedImageMaskPointer
typedef SpatialObject
< itkGetStaticConstMacro(FixedPointSetDimension)> 
FixedImageMaskType
typedef
FixedPointSetType::ConstPointer 
FixedPointSetConstPointer
typedef
FixedPointSetType::PixelType 
FixedPointSetPixelType
typedef MetricBase< TElastix >
::FixedPointSetType 
FixedPointSetType
typedef
TransformType::InputPointType 
InputPointType
typedef Superclass::MeasureType MeasureType
typedef
MovingImageMaskType::ConstPointer 
MovingImageMaskConstPointer
typedef
MovingImageMaskType::Pointer 
MovingImageMaskPointer
typedef SpatialObject
< itkGetStaticConstMacro(MovingPointSetDimension)> 
MovingImageMaskType
typedef
MovingPointSetType::ConstPointer 
MovingPointSetConstPointer
typedef
MovingPointSetType::PixelType 
MovingPointSetPixelType
typedef MetricBase< TElastix >
::MovingPointSetType 
MovingPointSetType
typedef
TransformType::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
typedef
TransformType::OutputPointType 
OutputPointType
typedef Superclass::ParametersType ParametersType
typedef
FixedPointSetType::PointDataContainer::ConstIterator 
PointDataIterator
typedef SmartPointer< SelfPointer
typedef
FixedPointSetType::PointsContainer::ConstIterator 
PointIterator
typedef
SingleValuedPointSetToPointSetMetric 
Self
typedef SingleValuedCostFunction Superclass
typedef TransformType::JacobianType TransformJacobianType
typedef
TransformType::ParametersType 
TransformParametersType
typedef TransformType::Pointer TransformPointer
typedef AdvancedTransform
< CoordinateRepresentationType,
itkGetStaticConstMacro(FixedPointSetDimension),
itkGetStaticConstMacro(MovingPointSetDimension) > 
TransformType
- Public Types inherited from elastix::MetricBase< TElastix >
typedef
AdvancedImageToImageMetric
< FixedImageType,
MovingImageType
AdvancedMetricType
typedef
Superclass::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass::ConfigurationType 
ConfigurationType
typedef
ITKBaseType::ParametersValueType 
CoordinateRepresentationType
typedef Superclass::ElastixPointer ElastixPointer
typedef Superclass::ElastixType ElastixType
typedef ElastixType::FixedImageType FixedImageType
typedef PointSet
< CoordinateRepresentationType,
FixedImageDimension,
DefaultStaticMeshTraits
< CoordinateRepresentationType,
FixedImageDimension,
FixedImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
FixedPointSetType
typedef FixedImageType::PointType FixedPointType
typedef FixedPointType::ValueType FixedPointValueType
typedef
AdvancedMetricType::ImageSamplerType 
ImageSamplerBaseType
typedef SingleValuedCostFunction ITKBaseType
typedef ITKBaseType::MeasureType MeasureType
typedef
ElastixType::MovingImageType 
MovingImageType
typedef PointSet
< CoordinateRepresentationType,
MovingImageDimension,
DefaultStaticMeshTraits
< CoordinateRepresentationType,
MovingImageDimension,
MovingImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
MovingPointSetType
typedef MovingImageType::PointType MovingPointType
typedef MovingPointType::ValueType MovingPointValueType
typedef
Superclass::RegistrationPointer 
RegistrationPointer
typedef
Superclass::RegistrationType 
RegistrationType
typedef MetricBase Self
typedef BaseComponentSE< TElastix > Superclass
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef
ElastixType::ConfigurationPointer 
ConfigurationPointer
typedef
ElastixType::ConfigurationType 
ConfigurationType
typedef ElastixType::Pointer ElastixPointer
typedef TElastix ElastixType
typedef RegistrationTypeRegistrationPointer
typedef
ElastixType::RegistrationBaseType 
RegistrationType
typedef BaseComponentSE Self
typedef BaseComponent Superclass

Public Member Functions

virtual int BeforeAllBase (void)
virtual void BeforeRegistration (void)
 elxClassNameMacro ("CorrespondingPointsEuclideanDistanceMetric")
virtual const char * GetClassName () const
virtual void Initialize (void) throw ( ExceptionObject )
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
unsigned int ReadLandmarks (const std::string &landmarkFileName, typename PointSetType::Pointer &pointSet, const typename ImageType::ConstPointer image)
virtual void SelectNewSamples (void)
- Public Member Functions inherited from itk::CorrespondingPointsEuclideanDistancePointMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
void GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const
MeasureType GetValue (const TransformParametersType &parameters) const
void GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const
- Public Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
virtual const FixedImageMaskTypeGetFixedImageMask ()
virtual const FixedPointSetTypeGetFixedPointSet ()
virtual const MovingImageMaskTypeGetMovingImageMask ()
virtual const MovingPointSetTypeGetMovingPointSet ()
unsigned int GetNumberOfParameters (void) const
virtual const TransformTypeGetTransform ()
 itkStaticConstMacro (FixedPointSetDimension, unsigned int, MetricBase< TElastix >::FixedPointSetType::PointDimension)
 itkStaticConstMacro (MovingPointSetDimension, unsigned int, MetricBase< TElastix >::MovingPointSetType::PointDimension)
virtual void SetFixedImageMask (const FixedImageMaskType *_arg)
virtual void SetFixedPointSet (const FixedPointSetType *_arg)
virtual void SetMovingImageMask (const MovingImageMaskType *_arg)
virtual void SetMovingPointSet (const MovingPointSetType *_arg)
virtual void SetTransform (TransformType *_arg)
void SetTransformParameters (const ParametersType &parameters) const
- Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void AfterEachIterationBase (void)
virtual void BeforeEachResolutionBase (void)
virtual ImageSamplerBaseTypeGetAdvancedMetricImageSampler (void) const
virtual bool GetAdvancedMetricUseImageSampler (void) const
virtual ITKBaseTypeGetAsITKBaseType (void)
virtual const ITKBaseTypeGetAsITKBaseType (void) const
virtual MeasureType GetCurrentExactMetricValue (void) const
virtual bool GetShowExactMetricValue (void) const
virtual void SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
virtual ElastixTypeGetElastix (void) const
virtual RegistrationPointer GetRegistration (void) const
virtual void SetConfiguration (ConfigurationType *_arg)
virtual void SetElastix (ElastixType *_arg)
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration (void)
virtual void AfterEachResolution (void)
virtual void AfterEachResolutionBase (void)
virtual void AfterRegistration (void)
virtual void AfterRegistrationBase (void)
virtual int BeforeAll (void)
virtual void BeforeEachResolution (void)
virtual void BeforeRegistrationBase (void)
virtual const char * elxGetClassName (void) const
virtual const char * GetComponentLabel (void) const
virtual void SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions

static Pointer New ()

Protected Member Functions

 CorrespondingPointsEuclideanDistanceMetric ()
virtual ~CorrespondingPointsEuclideanDistanceMetric ()
- Protected Member Functions inherited from itk::CorrespondingPointsEuclideanDistancePointMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
 CorrespondingPointsEuclideanDistancePointMetric ()
virtual ~CorrespondingPointsEuclideanDistancePointMetric ()
- Protected Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
void PrintSelf (std::ostream &os, Indent indent) const
 SingleValuedPointSetToPointSetMetric ()
virtual ~SingleValuedPointSetToPointSetMetric ()
- Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType GetExactValue (const ParametersType &parameters)
 MetricBase ()
virtual ~MetricBase ()
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
virtual ~BaseComponentSE ()
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
virtual ~BaseComponent ()

Private Member Functions

 CorrespondingPointsEuclideanDistanceMetric (const Self &)
void operator= (const Self &)

Additional Inherited Members

- Protected Types inherited from elastix::MetricBase< TElastix >
typedef itk::ImageGridSampler
< FixedImageType
ExactMetricImageSamplerType
typedef
ExactMetricImageSamplerType::SampleGridSpacingType 
ExactMetricSampleGridSpacingType
typedef ITKBaseType::ParametersType ParametersType
- Protected Attributes inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
FixedImageMaskConstPointer m_FixedImageMask
FixedPointSetConstPointer m_FixedPointSet
MovingImageMaskConstPointer m_MovingImageMask
MovingPointSetConstPointer m_MovingPointSet
unsigned int m_NumberOfPointsCounted
TransformPointer m_Transform
- Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType m_CurrentExactMetricValue
ExactMetricSampleGridSpacingType m_ExactMetricSampleGridSpacing
ExactMetricImageSamplerType::Pointer m_ExactMetricSampler
bool m_ShowExactMetricValue

Detailed Description

template<class TElastix>
class elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >

An metric based on the itk::CorrespondingPointsEuclideanDistancePointMetric.

The parameters used in this class are:

Parameters:
Metric: Select this metric as follows:
(Metric "CorrespondingPointsEuclideanDistanceMetric")

Definition at line 40 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

Member Typedef Documentation

template<class TElastix >
typedef SmartPointer<const Self> elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::ConstPointer

Typedefs from the superclass.

Definition at line 72 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

Typedefs inherited from elastix.

Definition at line 95 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

template<class TElastix >
typedef FixedImageType elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::ImageType
template<class TElastix >
typedef SmartPointer<Self> elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::Pointer

Assuming fixed and moving pointsets are of equal type, which implicitly assumes that the fixed and moving image are of the same type.

Definition at line 116 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

Standard ITK-stuff.

Definition at line 50 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

template<class TElastix >
typedef MetricBase<TElastix> elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::Superclass2
template<class TElastix >
typedef tmr::Timer elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::TimerType

Typedef for timer.

Definition at line 120 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

Constructor & Destructor Documentation

template<class TElastix >
elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::CorrespondingPointsEuclideanDistanceMetric ( )
inlineprotected

The constructor.

Definition at line 153 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

template<class TElastix >
virtual elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::~CorrespondingPointsEuclideanDistanceMetric ( )
inlineprotectedvirtual

The destructor.

Definition at line 155 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

template<class TElastix >
elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::CorrespondingPointsEuclideanDistanceMetric ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual int elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::BeforeAllBase ( void  )
virtual

Do some things before all:

  • Check and print the command line arguments fp and mp. This should be done in BeforeAllBase and not BeforeAll.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::BeforeRegistration ( void  )
virtual

Do some things before registration:

  • Load and set the pointsets.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::elxClassNameMacro ( "CorrespondingPointsEuclideanDistanceMetric< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "CorrespondingPointsEuclideanDistanceMetric")

template<class TElastix >
virtual const char* elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
virtual void elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::Initialize ( void  ) throw ( ExceptionObject )
virtual

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >.

template<class TElastix >
elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension.

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)

The moving image dimension.

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
static Pointer elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::New ( )
static
template<class TElastix >
void elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::operator= ( const Self )
private

The private copy constructor.

template<class TElastix >
unsigned int elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::ReadLandmarks ( const std::string &  landmarkFileName,
typename PointSetType::Pointer &  pointSet,
const typename ImageType::ConstPointer  image 
)

Function to read the corresponding points.

template<class TElastix >
virtual void elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::SelectNewSamples ( void  )
inlinevirtual

Overwrite to silence warning.

Reimplemented from elastix::MetricBase< TElastix >.

Definition at line 148 of file elxCorrespondingPointsEuclideanDistanceMetric.h.



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