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elastix::BSplineTransformWithDiffusion< TElastix > Class Template Reference

#include <elxBSplineTransformWithDiffusion.h>

Inheritance diagram for elastix::BSplineTransformWithDiffusion< TElastix >:
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Collaboration diagram for elastix::BSplineTransformWithDiffusion< TElastix >:
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Public Types

typedef
BSplineTransformType::Pointer 
BSplineTransformPointer
typedef
AdvancedBSplineDeformableTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
elx::TransformBase< TElastix >
::FixedImageDimension,
__VSplineOrder
BSplineTransformType
typedef
Superclass2::CombinationTransformType 
CombinationTransformType
typedef
Superclass2::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass2::ConfigurationType 
ConfigurationType
typedef SmartPointer< const SelfConstPointer
typedef
BSplineTransformType::ContinuousIndexType 
ContinuousIndexType
typedef Superclass2::CoordRepType CoordRepType
typedef ImageFileWriter
< VectorImageType
DeformationFieldWriterType
typedef
VectorMeanDiffusionImageFilter
< VectorImageType,
GrayValueImageType
DiffusionFilterType
typedef Image< short,
itkGetStaticConstMacro(SpaceDimension) > 
DummyImageType
typedef
ImageRegionConstIterator
< DummyImageType
DummyIteratorType
typedef Superclass2::ElastixPointer ElastixPointer
typedef Superclass2::ElastixType ElastixType
typedef ElastixType::FixedImageType FixedImageELXType
typedef Superclass2::FixedImageType FixedImageType
typedef Superclass1::Superclass GenericDeformationFieldRegulizer
typedef ImageRegionIterator
< GrayValueImageType
GrayValueImageIteratorType
typedef ImageFileReader
< GrayValueImageType
GrayValueImageReaderType
typedef FixedImageELXType GrayValueImageType
typedef ImageFileWriter
< GrayValueImageType
GrayValueImageWriterType
typedef
GrayValueImageType::PixelType 
GrayValuePixelType
typedef
BSplineTransformType::ImagePointer 
ImagePointer
typedef
BSplineTransformType::ImageType 
ImageType
typedef
BSplineTransformType::IndexType 
IndexType
typedef
Superclass1::InputCovariantVectorType 
InputCovariantVectorType
typedef Superclass1::InputPointType InputPointType
typedef
Superclass1::InputVectorType 
InputVectorType
typedef
Superclass1::InputVnlVectorType 
InputVnlVectorType
typedef
Superclass1::IntermediaryDFTransformType 
IntermediaryDFTransformType
typedef
BSplineInterpolateImageFunction
< GrayValueImageType
InterpolatorType
typedef Superclass2::ITKBaseType ITKBaseType
typedef Superclass1::JacobianType JacobianType
typedef MaximumImageFilter
< GrayValueImageType,
GrayValueImageType,
GrayValueImageType
MaximumImageFilterType
typedef
ElastixType::MovingImageType 
MovingImageELXType
typedef
Superclass2::MovingImageType 
MovingImageType
typedef
BSplineTransformType::OriginType 
OriginType
typedef
Superclass1::OutputCovariantVectorType 
OutputCovariantVectorType
typedef
Superclass1::OutputPointType 
OutputPointType
typedef
Superclass1::OutputVectorType 
OutputVectorType
typedef
Superclass1::OutputVnlVectorType 
OutputVnlVectorType
typedef
BSplineTransformType::ParameterIndexArrayType 
ParameterIndexArrayType
typedef Superclass1::ParametersType ParametersType
typedef
BSplineTransformType::PixelType 
PixelType
typedef SmartPointer< SelfPointer
typedef VectorImageType::SizeType RadiusType
typedef
BSplineTransformType::RegionType 
RegionType
typedef
Superclass2::RegistrationPointer 
RegistrationPointer
typedef
Superclass2::RegistrationType 
RegistrationType
typedef ResampleImageFilter
< MovingImageELXType,
GrayValueImageType,
CoordRepType
ResamplerType1
typedef ResampleImageFilter
< GrayValueImageType,
GrayValueImageType,
CoordRepType
ResamplerType2
typedef Superclass1::ScalarType ScalarType
typedef
BSplineTransformWithDiffusion 
Self
typedef
BSplineTransformType::SizeType 
SizeType
typedef
BSplineTransformType::SpacingType 
SpacingType
typedef
DeformationFieldRegulizer
< AdvancedCombinationTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
elx::TransformBase< TElastix >
::FixedImageDimension > > 
Superclass1
typedef elx::TransformBase
< TElastix > 
Superclass2
typedef ImageRegionIterator
< VectorImageType
VectorImageIteratorType
typedef
Superclass1::VectorImageType 
VectorImageType
typedef ImageFileReader
< VectorImageType
VectorReaderType
typedef VectorImageType::PixelType VectorType
typedef
BSplineTransformType::WeightsFunctionType 
WeightsFunctionType
typedef
BSplineTransformType::WeightsType 
WeightsType
- Public Types inherited from itk::DeformationFieldRegulizer< AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > >
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::InputCovariantVectorType 
InputCovariantVectorType
typedef Superclass::InputPointType InputPointType
typedef Superclass::InputVectorType InputVectorType
typedef
Superclass::InputVnlVectorType 
InputVnlVectorType
typedef
DeformationVectorFieldTransform
< ScalarType,
itkGetStaticConstMacro(InputSpaceDimension) > 
IntermediaryDFTransformType
typedef ImageRegionIterator
< VectorImageType
IteratorType
typedef Superclass::JacobianType JacobianType
typedef VectorImageType::PointType OriginType
typedef
Superclass::OutputCovariantVectorType 
OutputCovariantVectorType
typedef Superclass::OutputPointType OutputPointType
typedef
Superclass::OutputVectorType 
OutputVectorType
typedef
Superclass::OutputVnlVectorType 
OutputVnlVectorType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef VectorImageType::RegionType RegionType
typedef Superclass::ScalarType ScalarType
typedef DeformationFieldRegulizer Self
typedef
VectorImageType::SpacingType 
SpacingType
typedef
AdvancedCombinationTransform
< elx::TransformBase< TElastix >
::CoordRepType,
elx::TransformBase< TElastix >
::FixedImageDimension > 
Superclass
typedef
IntermediaryDFTransformType::CoefficientVectorImageType 
VectorImageType
typedef VectorImageType::PixelType VectorPixelType
- Public Types inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
typedef SmartPointer< const SelfConstPointer
typedef
CurrentTransformType::Pointer 
CurrentTransformPointer
typedef Superclass CurrentTransformType
typedef const JacobianType
&(Self::* 
GetJacobianFunctionPointer )(const InputPointType &) const
typedef void(Self::* GetJacobianOfSpatialHessianFunctionPointer )(const InputPointType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::* GetJacobianOfSpatialHessianFunctionPointer2 )(const InputPointType &, SpatialHessianType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::* GetJacobianOfSpatialJacobianFunctionPointer )(const InputPointType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::* GetJacobianOfSpatialJacobianFunctionPointer2 )(const InputPointType &, SpatialJacobianType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::* GetSparseJacobianFunctionPointer )(const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::* GetSpatialHessianFunctionPointer )(const InputPointType &, SpatialHessianType &) const
typedef void(Self::* GetSpatialJacobianFunctionPointer )(const InputPointType &, SpatialJacobianType &) const
typedef
InitialTransformType::ConstPointer 
InitialTransformConstPointer
typedef
InitialTransformType::Pointer 
InitialTransformPointer
typedef Superclass InitialTransformType
typedef
Superclass::InputCovariantVectorType 
InputCovariantVectorType
typedef Superclass::InputPointType InputPointType
typedef Superclass::InputVectorType InputVectorType
typedef
Superclass::InputVnlVectorType 
InputVnlVectorType
typedef
Superclass::InternalMatrixType 
InternalMatrixType
typedef
Superclass::JacobianOfSpatialHessianType 
JacobianOfSpatialHessianType
typedef
Superclass::JacobianOfSpatialJacobianType 
JacobianOfSpatialJacobianType
typedef Superclass::JacobianType JacobianType
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
typedef
Superclass::OutputCovariantVectorType 
OutputCovariantVectorType
typedef Superclass::OutputPointType OutputPointType
typedef
Superclass::OutputVectorType 
OutputVectorType
typedef
Superclass::OutputVnlVectorType 
OutputVnlVectorType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::ScalarType ScalarType
typedef
AdvancedCombinationTransform 
Self
typedef
Superclass::SpatialHessianType 
SpatialHessianType
typedef
Superclass::SpatialJacobianType 
SpatialJacobianType
typedef AdvancedTransform
< elx::TransformBase< TElastix >
::CoordRepType, NDimensions,
NDimensions > 
Superclass
typedef OutputPointType(Self::* TransformPointFunctionPointer )(const InputPointType &) const
- Public Types inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::InputCovariantVectorType 
InputCovariantVectorType
typedef Superclass::InputPointType InputPointType
typedef Superclass::InputVectorType InputVectorType
typedef
Superclass::InputVnlVectorType 
InputVnlVectorType
typedef
SpatialJacobianType::InternalMatrixType 
InternalMatrixType
typedef std::vector
< SpatialHessianType
JacobianOfSpatialHessianType
typedef std::vector
< SpatialJacobianType
JacobianOfSpatialJacobianType
typedef Superclass::JacobianType JacobianType
typedef std::vector< unsigned
long > 
NonZeroJacobianIndicesType
typedef
Superclass::OutputCovariantVectorType 
OutputCovariantVectorType
typedef Superclass::OutputPointType OutputPointType
typedef
Superclass::OutputVectorType 
OutputVectorType
typedef
Superclass::OutputVnlVectorType 
OutputVnlVectorType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::ScalarType ScalarType
typedef AdvancedTransform Self
typedef FixedArray< Matrix
< ScalarType,
InputSpaceDimension,
InputSpaceDimension >
, OutputSpaceDimension > 
SpatialHessianType
typedef Matrix< ScalarType,
OutputSpaceDimension,
InputSpaceDimension > 
SpatialJacobianType
typedef Transform
< elx::TransformBase< TElastix >
::CoordRepType,
NInputDimensions,
NOutputDimensions > 
Superclass
- Public Types inherited from elastix::TransformBase< TElastix >
typedef
itk::AdvancedCombinationTransform
< CoordRepType,
itkGetStaticConstMacro(FixedImageDimension) > 
CombinationTransformType
typedef
ConfigurationType::CommandLineArgumentMapType 
CommandLineArgumentMapType
typedef
ConfigurationType::CommandLineEntryType 
CommandLineEntryType
typedef ComponentDatabase ComponentDatabaseType
typedef
ComponentDatabaseType::ComponentDescriptionType 
ComponentDescriptionType
typedef
Superclass::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass::ConfigurationType 
ConfigurationType
typedef ElastixType::CoordRepType CoordRepType
typedef Superclass::ElastixPointer ElastixPointer
typedef Superclass::ElastixType ElastixType
typedef ElastixType::FixedImageType FixedImageType
typedef
CombinationTransformType::InitialTransformType 
InitialTransformType
typedef ITKBaseType::InputPointType InputPointType
typedef itk::AdvancedTransform
< CoordRepType,
itkGetStaticConstMacro(FixedImageDimension),
itkGetStaticConstMacro(MovingImageDimension) > 
ITKBaseType
typedef
RegistrationType::ITKBaseType 
ITKRegistrationType
typedef
ElastixType::MovingImageType 
MovingImageType
typedef itk::Object ObjectType
typedef
ITKRegistrationType::OptimizerType 
OptimizerType
typedef
ITKBaseType::OutputPointType 
OutputPointType
typedef ITKBaseType::ParametersType ParametersType
typedef elx::ProgressCommand ProgressCommandType
typedef
ComponentDatabase::PtrToCreator 
PtrToCreator
typedef
Superclass::RegistrationPointer 
RegistrationPointer
typedef
Superclass::RegistrationType 
RegistrationType
typedef OptimizerType::ScalesType ScalesType
typedef TransformBase Self
typedef BaseComponentSE< TElastix > Superclass
typedef ParametersType::ValueType ValueType
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef
ElastixType::ConfigurationPointer 
ConfigurationPointer
typedef
ElastixType::ConfigurationType 
ConfigurationType
typedef ElastixType::Pointer ElastixPointer
typedef TElastix ElastixType
typedef RegistrationTypeRegistrationPointer
typedef
ElastixType::RegistrationBaseType 
RegistrationType
typedef BaseComponentSE Self
typedef BaseComponent Superclass

Public Member Functions

virtual void AfterEachIteration (void)
virtual void AfterRegistration (void)
virtual void BeforeEachResolution (void)
virtual void BeforeRegistration (void)
void DiffuseDeformationField (void)
 elxClassNameMacro ("BSplineTransformWithDiffusion")
virtual const char * GetClassName () const
virtual void IncreaseScale (void)
 itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
 itkStaticConstMacro (SplineOrder, unsigned int, __VSplineOrder)
virtual void ReadFromFile (void)
virtual void SetInitialGrid (bool upsampleGridOption)
virtual OutputPointType TransformPoint (const InputPointType &point) const
virtual void WriteToFile (const ParametersType &param) const
- Public Member Functions inherited from itk::DeformationFieldRegulizer< AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > >
virtual const
IntermediaryDFTransformType
GetIntermediaryDeformationFieldTransform ()
void InitializeDeformationFields (void)
 itkStaticConstMacro (InputSpaceDimension, unsigned int, Superclass::InputSpaceDimension)
 itkStaticConstMacro (OutputSpaceDimension, unsigned int, Superclass::OutputSpaceDimension)
virtual void SetDeformationFieldOrigin (OriginType _arg)
virtual void SetDeformationFieldRegion (RegionType _arg)
virtual void SetDeformationFieldSpacing (SpacingType _arg)
virtual void UpdateIntermediaryDeformationFieldTransform (typename VectorImageType::Pointer vecImage)
- Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
virtual CurrentTransformTypeGetCurrentTransform ()
virtual const ParametersTypeGetFixedParameters (void) const
virtual bool GetHasNonZeroSpatialHessian (void) const
virtual const
InitialTransformType
GetInitialTransform ()
virtual bool GetInverse (Self *inverse) const
virtual const JacobianTypeGetJacobian (const InputPointType &point) const
virtual void GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual unsigned long GetNumberOfNonZeroJacobianIndices (void) const
virtual unsigned int GetNumberOfParameters (void) const
virtual const ParametersTypeGetParameters (void) const
virtual void GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const
virtual void GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const
virtual bool GetUseAddition () const
virtual bool GetUseComposition () const
virtual bool HasNonZeroJacobianOfSpatialHessian (void) const
virtual bool IsLinear (void) const
 itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)
virtual void SetCurrentTransform (CurrentTransformType *_arg)
virtual void SetFixedParameters (const ParametersType &fixedParam)
virtual void SetInitialTransform (const InitialTransformType *_arg)
virtual void SetParameters (const ParametersType &param)
virtual void SetParametersByValue (const ParametersType &param)
virtual void SetUseAddition (bool _arg)
virtual void SetUseComposition (bool _arg)
- Public Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
virtual bool GetHasNonZeroJacobianOfSpatialHessian () const
virtual void GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const
virtual void GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const
 itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)
 itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)
- Public Member Functions inherited from elastix::TransformBase< TElastix >
virtual void AfterRegistrationBase (void)
virtual int BeforeAllBase (void)
virtual int BeforeAllTransformix (void)
virtual void BeforeRegistrationBase (void)
virtual void ComputeDeterminantOfSpatialJacobian (void) const
virtual void ComputeSpatialJacobian (void) const
virtual const
CombinationTransformType
GetAsCombinationTransform (void) const
virtual CombinationTransformTypeGetAsCombinationTransform (void)
virtual ITKBaseTypeGetAsITKBaseType (void)
virtual const ITKBaseTypeGetAsITKBaseType (void) const
virtual const
InitialTransformType
GetInitialTransform (void) const
virtual const char * GetTransformParametersFileName () const
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void ReadInitialTransformFromFile (const char *transformParameterFileName)
virtual void SetFinalParameters (void)
virtual void SetInitialTransform (InitialTransformType *_arg)
virtual void SetReadWriteTransformParameters (const bool _arg)
virtual void SetTransformParametersFileName (const char *filename)
virtual void TransformPoints (void) const
virtual void TransformPointsAllPoints (void) const
virtual void TransformPointsSomePoints (const std::string filename) const
virtual void TransformPointsSomePointsVTK (const std::string filename) const
virtual void WriteToFile (void) const
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
virtual ElastixTypeGetElastix (void) const
virtual RegistrationPointer GetRegistration (void) const
virtual void SetConfiguration (ConfigurationType *_arg)
virtual void SetElastix (ElastixType *_arg)
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIterationBase (void)
virtual void AfterEachResolution (void)
virtual void AfterEachResolutionBase (void)
virtual int BeforeAll (void)
virtual void BeforeEachResolutionBase (void)
virtual const char * elxGetClassName (void) const
virtual const char * GetComponentLabel (void) const
virtual void SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions

static Pointer New ()

Protected Member Functions

 BSplineTransformWithDiffusion ()
virtual ~BSplineTransformWithDiffusion ()
- Protected Member Functions inherited from itk::DeformationFieldRegulizer< AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > >
 DeformationFieldRegulizer ()
virtual ~DeformationFieldRegulizer ()
- Protected Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
 AdvancedCombinationTransform ()
const JacobianTypeGetJacobianNoCurrentTransform (const InputPointType &point) const
void GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
const JacobianTypeGetJacobianNoInitialTransform (const InputPointType &point) const
void GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
void GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
const JacobianTypeGetJacobianUseAddition (const InputPointType &point) const
void GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
const JacobianTypeGetJacobianUseComposition (const InputPointType &point) const
void GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
void GetSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh) const
void GetSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh) const
void GetSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh) const
void GetSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh) const
void GetSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj) const
void GetSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj) const
void GetSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj) const
void GetSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj) const
virtual void NoCurrentTransformSet (void) const throw (ExceptionObject)
OutputPointType TransformPointNoCurrentTransform (const InputPointType &point) const
OutputPointType TransformPointNoInitialTransform (const InputPointType &point) const
OutputPointType TransformPointUseAddition (const InputPointType &point) const
OutputPointType TransformPointUseComposition (const InputPointType &point) const
virtual void UpdateCombinationMethod (void)
virtual ~AdvancedCombinationTransform ()
- Protected Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
 AdvancedTransform ()
 AdvancedTransform (unsigned int Dimension, unsigned int NumberOfParameters)
virtual ~AdvancedTransform ()
- Protected Member Functions inherited from elastix::TransformBase< TElastix >
void AutomaticScalesEstimation (ScalesType &scales) const
 TransformBase ()
virtual ~TransformBase ()
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
virtual ~BaseComponentSE ()
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
virtual ~BaseComponent ()

Protected Attributes

SpacingType m_GridSpacingFactor
- Protected Attributes inherited from elastix::TransformBase< TElastix >
ParametersType m_FinalParameters
std::string m_TransformParametersFileName
ParametersTypem_TransformParametersPointer
- Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer m_Configuration
ElastixPointer m_Elastix
RegistrationPointer m_Registration

Private Member Functions

 BSplineTransformWithDiffusion (const Self &)
void operator= (const Self &)

Private Attributes

bool m_AlsoFixed
ParametersType m_BSplineParameters
BSplineTransformPointer m_BSplineTransform
VectorImageType::Pointer m_DeformationField
OriginType m_DeformationOrigin
RegionType m_DeformationRegion
SpacingType m_DeformationSpacing
VectorImageType::Pointer m_DiffusedField
DiffusionFilterType::Pointer m_Diffusion
std::string m_FixedSegmentationFileName
GrayValueImageType::Pointer m_FixedSegmentationImage
GrayValueImageReaderType::Pointer m_FixedSegmentationReader
GrayValueImageType::Pointer m_GrayValueImage1
GrayValueImageType::Pointer m_GrayValueImage2
InterpolatorType::Pointer m_Interpolator
std::string m_MovingSegmentationFileName
GrayValueImageType::Pointer m_MovingSegmentationImage
GrayValueImageReaderType::Pointer m_MovingSegmentationReader
ResamplerType1::Pointer m_Resampler1
ResamplerType2::Pointer m_Resampler2
bool m_ThresholdBool
GrayValuePixelType m_ThresholdHU
bool m_UseFixedSegmentation
bool m_UseMovingSegmentation
bool m_WriteDiffusionFiles

Detailed Description

template<class TElastix>
class elastix::BSplineTransformWithDiffusion< TElastix >

This class combines a B-spline transform with the diffusion/filtering of the deformation field.

Every n iterations the deformation field is diffused using the VectorMeanDiffusionImageFilter. The total transformation of a point is determined by adding the B-spline deformation to the deformation field arrow. Filtering of the deformation field is based on some 'stiffness coefficient' image.

Todo:
: this Transform has not been tested for images with Direction cosines matrix other than the identity matrix.
Warning
Using this transform in with the option (HowToCombineTranforms "Compose"). May give unpredictable results. Especially if the initial transformation is large. This is because the coefficient grid is not properly initialized. Better use (HowToCombineTranforms "Add").

The parameters used in this class are:

Parameters:
Transform: Select this transform as follows:
(Transform "BSplineTransformWithDiffusion")
Parameters:
FinalGridSpacing: the grid spacing of the B-spline transform part of this transform for each dimension.
example: (FinalGridSpacing 8.0 8.0 8.0) If only one argument is given, that factor is used for each dimension. The spacing is not in millimeters, but in "voxel size units". The default is 8.0 in every dimension.
Parameters:
UpsampleGridOption: whether or not the B-spline grid should be upsampled from one resolution level to another. Choose from {true, false}.
example: (UpsampleGridOption "true") The default is "true".
Parameters:
FilterPattern: defines according to what schedule/pattern the deformation field should be filtered. Choose from {1,2}, where FilterPattern 1 is diffusion every "DiffusionEachNIterations" iterations, and where FilterPattern 2 filters more frequent in the beginning and less frequent at the end of a resolution.
example: (FilterPattern 1) The default is filter pattern 1.
Parameters:
DiffusionEachNIterations: defines for FilterPattern 1 after how many iterations of the optimiser there should be a filtering step.
example: (DiffusionEachNIterations 5) The default is 1.
Parameters:
AfterIterations: defines for FilterPattern 2 after how many iterations of the optimiser the filter frequency should be increased.
example: (AfterIterations 100 200) The default is 50 and 100.
Parameters:
HowManyIterations: defines to what frequency the filtering should be increased.
example: (HowManyIterations 1 5 10) The default is 1, 5 and 10.
Parameters:
NumberOfDiffusionIterations: defines the number of times the adaptive filtering is performed.
example: (NumberOfDiffusionIterations 10) The default is 1.
Parameters:
Radius: defines the radius of the filter.
example: (Radius 1) The default is 1.
Parameters:
ThresholdBool: defines whether or not the stiffness coefficient image should be thresholded. Choose from {true, false}.
example: (ThresholdBool "true") The default is "true".
Parameters:
ThresholdHU: if it is thresholded, this defines the threshold in Houndsfield units.
example: (ThresholdHU 150) The default is 150.
Parameters:
WriteDiffusionFiles: defines whether or not the stiffness coefficient image, the deformation field and the filtered field should be written to file. Choose from {true, false}.
example: (WriteDiffusionFiles "true") The default is "false".
Parameters:
GrayValueImageAlsoBasedOnFixedImage: defines whether or not the stiffness coefficient image should also be based on the fixed image. Choose from {true, false}.
example: (GrayValueImageAlsoBasedOnFixedImage "true") The default is "true".
Parameters:
UseFixedSegmentation: defines whether or not the stiffness coefficient image should be based on some prior defined segmentation of rigid structures in the fixed image, instead on a thresholding. Choose from {true, false}.
example: (UseFixedSegmentation "true") The default is "false".
Parameters:
FixedSegmentationFileName: the filename of this segmentation.
example: (FixedSegmentationFileName "somestring")
Parameters:
UseMovingSegmentation: defines whether or not the stiffness coefficient image should be based on some prior defined segmentation of rigid structures in the moving image, instead on a thresholding. Choose from {true, false}.
example: (UseMovingSegmentation "true") The default is "false".
Parameters:
MovingSegmentationFileName: the filename of this segmentation.
example: (MovingSegmentationFileName "somestring")
Parameters:
DefaultPixelValueForGVI: the default pixel value, when resampling the grayvalueimage. example: (DefaultPixelValueForGVI 0) The default is 0.

The transform parameters necessary for transformix, additionally defined by this class, are:

Transform Parameters:
DeformationFieldFileName: stores the name of the deformation field.
example: (DeformationFieldFileName "defField.mhd")
Transform Parameters:
GridSize: stores the size of the B-spline grid.
example: (GridSize 16 16 16)
Transform Parameters:
GridIndex: stores the index of the B-spline grid.
example: (GridIndex 0 0 0)
Transform Parameters:
GridSpacing: stores the spacing of the B-spline grid.
example: (GridSpacing 16.0 16.0 16.0)
Transform Parameters:
GridOrigin: stores the origin of the B-spline grid.
example: (GridOrigin 0.0 0.0 0.0)

Definition at line 160 of file elxBSplineTransformWithDiffusion.h.

Member Typedef Documentation

Definition at line 266 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef AdvancedBSplineDeformableTransform< typename elx::TransformBase<TElastix>::CoordRepType, elx::TransformBase<TElastix>::FixedImageDimension, __VSplineOrder > elastix::BSplineTransformWithDiffusion< TElastix >::BSplineTransformType

The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform.

Definition at line 190 of file elxBSplineTransformWithDiffusion.h.

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template<class TElastix >
typedef SmartPointer<const Self> elastix::BSplineTransformWithDiffusion< TElastix >::ConstPointer

Definition at line 193 of file elxBSplineTransformWithDiffusion.h.

Definition at line 237 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef Superclass2::CoordRepType elastix::BSplineTransformWithDiffusion< TElastix >::CoordRepType

Definition at line 247 of file elxBSplineTransformWithDiffusion.h.

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Definition at line 282 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef Image< short, itkGetStaticConstMacro( SpaceDimension ) > elastix::BSplineTransformWithDiffusion< TElastix >::DummyImageType

Other typedef's.

Definition at line 263 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef ImageRegionConstIterator< DummyImageType > elastix::BSplineTransformWithDiffusion< TElastix >::DummyIteratorType

Definition at line 265 of file elxBSplineTransformWithDiffusion.h.

Definition at line 242 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef Superclass2::ElastixType elastix::BSplineTransformWithDiffusion< TElastix >::ElastixType

Typedef's from TransformBase.

Definition at line 241 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef ElastixType::FixedImageType elastix::BSplineTransformWithDiffusion< TElastix >::FixedImageELXType

References to the fixed and moving image types.

Definition at line 258 of file elxBSplineTransformWithDiffusion.h.

Definition at line 248 of file elxBSplineTransformWithDiffusion.h.

Definition at line 267 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef ImageRegionIterator< GrayValueImageType > elastix::BSplineTransformWithDiffusion< TElastix >::GrayValueImageIteratorType

Definition at line 277 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef ImageFileReader< GrayValueImageType > elastix::BSplineTransformWithDiffusion< TElastix >::GrayValueImageReaderType

Definition at line 292 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef FixedImageELXType elastix::BSplineTransformWithDiffusion< TElastix >::GrayValueImageType

Definition at line 274 of file elxBSplineTransformWithDiffusion.h.

Definition at line 293 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef GrayValueImageType::PixelType elastix::BSplineTransformWithDiffusion< TElastix >::GrayValuePixelType

Definition at line 275 of file elxBSplineTransformWithDiffusion.h.

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Other typedef's inherited from Superclass1.

Definition at line 254 of file elxBSplineTransformWithDiffusion.h.

Definition at line 291 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef Superclass2::ITKBaseType elastix::BSplineTransformWithDiffusion< TElastix >::ITKBaseType

Definition at line 250 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef Superclass1::JacobianType elastix::BSplineTransformWithDiffusion< TElastix >::JacobianType

Definition at line 216 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef MaximumImageFilter< GrayValueImageType, GrayValueImageType, GrayValueImageType > elastix::BSplineTransformWithDiffusion< TElastix >::MaximumImageFilterType

Definition at line 280 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef ElastixType::MovingImageType elastix::BSplineTransformWithDiffusion< TElastix >::MovingImageELXType

Definition at line 259 of file elxBSplineTransformWithDiffusion.h.

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Typedef's specific for the BSplineTransform.

Definition at line 227 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef SmartPointer<Self> elastix::BSplineTransformWithDiffusion< TElastix >::Pointer

Definition at line 192 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef VectorImageType::SizeType elastix::BSplineTransformWithDiffusion< TElastix >::RadiusType

Definition at line 283 of file elxBSplineTransformWithDiffusion.h.

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Definition at line 286 of file elxBSplineTransformWithDiffusion.h.

Definition at line 289 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef Superclass1::ScalarType elastix::BSplineTransformWithDiffusion< TElastix >::ScalarType

Typedefs inherited from the superclass.

Definition at line 214 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef BSplineTransformWithDiffusion elastix::BSplineTransformWithDiffusion< TElastix >::Self

Standard ITK-stuff.

Definition at line 174 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef BSplineTransformType::SizeType elastix::BSplineTransformWithDiffusion< TElastix >::SizeType

Definition at line 232 of file elxBSplineTransformWithDiffusion.h.

Definition at line 233 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef DeformationFieldRegulizer< AdvancedCombinationTransform< typename elx::TransformBase<TElastix>::CoordRepType, elx::TransformBase<TElastix>::FixedImageDimension > > elastix::BSplineTransformWithDiffusion< TElastix >::Superclass1

Definition at line 181 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef elx::TransformBase<TElastix> elastix::BSplineTransformWithDiffusion< TElastix >::Superclass2

Definition at line 182 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef ImageRegionIterator< VectorImageType > elastix::BSplineTransformWithDiffusion< TElastix >::VectorImageIteratorType

Definition at line 273 of file elxBSplineTransformWithDiffusion.h.

Definition at line 255 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef ImageFileReader< VectorImageType > elastix::BSplineTransformWithDiffusion< TElastix >::VectorReaderType

Typedef's for the diffusion of the deformation field.

Definition at line 270 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
typedef VectorImageType::PixelType elastix::BSplineTransformWithDiffusion< TElastix >::VectorType

Definition at line 271 of file elxBSplineTransformWithDiffusion.h.

Definition at line 235 of file elxBSplineTransformWithDiffusion.h.

Definition at line 236 of file elxBSplineTransformWithDiffusion.h.

Constructor & Destructor Documentation

template<class TElastix >
elastix::BSplineTransformWithDiffusion< TElastix >::BSplineTransformWithDiffusion ( )
protected
 Method to transform a point with extra arguments. Just calls

the Superclass1's implementation. Has to be present here since it is an overloaded function.

virtual void TransformPoint( const InputPointType & inputPoint, OutputPointType & outputPoint, WeightsType & weights, ParameterIndexArrayType & indices, bool & inside ) const; The constructor.

template<class TElastix >
virtual elastix::BSplineTransformWithDiffusion< TElastix >::~BSplineTransformWithDiffusion ( )
inlineprotectedvirtual

The destructor.

Definition at line 361 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
elastix::BSplineTransformWithDiffusion< TElastix >::BSplineTransformWithDiffusion ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual void elastix::BSplineTransformWithDiffusion< TElastix >::AfterEachIteration ( void  )
virtual

Execute stuff after each iteration:

  • Do a diffusion of the deformation field.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::BSplineTransformWithDiffusion< TElastix >::AfterRegistration ( void  )
virtual

Execute stuff after registration:

  • Destroy things that are not needed anymore in order to free memory.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::BSplineTransformWithDiffusion< TElastix >::BeforeEachResolution ( void  )
virtual

Execute stuff before each new pyramid resolution:

  • upsample the B-spline grid.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::BSplineTransformWithDiffusion< TElastix >::BeforeRegistration ( void  )
virtual

Execute stuff before the actual registration:

  • Create an initial B-spline grid.
  • Create initial registration parameters.
  • Setup stuff for the diffusion of the deformation field.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
void elastix::BSplineTransformWithDiffusion< TElastix >::DiffuseDeformationField ( void  )

Diffuse the deformation field.

template<class TElastix >
elastix::BSplineTransformWithDiffusion< TElastix >::elxClassNameMacro ( "BSplineTransformWithDiffusion< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "BSplineTransformWithDiffusion")

template<class TElastix >
virtual const char* elastix::BSplineTransformWithDiffusion< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::TransformBase< TElastix >.

template<class TElastix >
virtual void elastix::BSplineTransformWithDiffusion< TElastix >::IncreaseScale ( void  )
virtual

Upsample the B-spline grid.

template<class TElastix >
elastix::BSplineTransformWithDiffusion< TElastix >::itkStaticConstMacro ( SpaceDimension  ,
unsigned  int,
Superclass2::FixedImageDimension   
)

Dimension of the domain space.

template<class TElastix >
elastix::BSplineTransformWithDiffusion< TElastix >::itkStaticConstMacro ( SplineOrder  ,
unsigned  int,
__VSplineOrder   
)

The B-spline order.

template<class TElastix >
static Pointer elastix::BSplineTransformWithDiffusion< TElastix >::New ( )
static
template<class TElastix >
void elastix::BSplineTransformWithDiffusion< TElastix >::operator= ( const Self )
private

The private copy constructor.

template<class TElastix >
virtual void elastix::BSplineTransformWithDiffusion< TElastix >::ReadFromFile ( void  )
virtual

Function to read transform-parameters from a file.

Reimplemented from elastix::TransformBase< TElastix >.

template<class TElastix >
virtual void elastix::BSplineTransformWithDiffusion< TElastix >::SetInitialGrid ( bool  upsampleGridOption)
virtual

Set the initial B-spline grid.

template<class TElastix >
virtual OutputPointType elastix::BSplineTransformWithDiffusion< TElastix >::TransformPoint ( const InputPointType point) const
virtual

Method to transform a point. This method just calls the implementation from the GenericDeformationFieldRegulizer. This is necessary, since: The DeformationFieldRegulizerFor is used which expects that its template argument is a BSplineDeformableTransform. This is not the case, because we gave it a BSplineCombinationTransform. This last class has a slightly different behavior of the TransformPoint() method (it does not call the TransformPoint() with with 5 arguments, as the BSplineDeformableTransform does).

Reimplemented from itk::DeformationFieldRegulizer< AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > >.

template<class TElastix >
virtual void elastix::BSplineTransformWithDiffusion< TElastix >::WriteToFile ( const ParametersType param) const
virtual

Function to write transform-parameters to a file.

Reimplemented from elastix::TransformBase< TElastix >.

Field Documentation

template<class TElastix >
bool elastix::BSplineTransformWithDiffusion< TElastix >::m_AlsoFixed
private

Definition at line 394 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
ParametersType elastix::BSplineTransformWithDiffusion< TElastix >::m_BSplineParameters
private

The B-spline parameters, which is going to be filled with zeros.

Definition at line 401 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
BSplineTransformPointer elastix::BSplineTransformWithDiffusion< TElastix >::m_BSplineTransform
private

The internal BSplineTransform, set as a current transform in the combination transform.

Definition at line 406 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
VectorImageType::Pointer elastix::BSplineTransformWithDiffusion< TElastix >::m_DeformationField
private

Definition at line 375 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
OriginType elastix::BSplineTransformWithDiffusion< TElastix >::m_DeformationOrigin
private

Definition at line 389 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
RegionType elastix::BSplineTransformWithDiffusion< TElastix >::m_DeformationRegion
private

Definition at line 388 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
SpacingType elastix::BSplineTransformWithDiffusion< TElastix >::m_DeformationSpacing
private

Definition at line 390 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
VectorImageType::Pointer elastix::BSplineTransformWithDiffusion< TElastix >::m_DiffusedField
private

Definition at line 376 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
DiffusionFilterType::Pointer elastix::BSplineTransformWithDiffusion< TElastix >::m_Diffusion
private

Member variables for diffusion.

Definition at line 374 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
std::string elastix::BSplineTransformWithDiffusion< TElastix >::m_FixedSegmentationFileName
private

Definition at line 384 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
GrayValueImageType::Pointer elastix::BSplineTransformWithDiffusion< TElastix >::m_FixedSegmentationImage
private

Definition at line 380 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
GrayValueImageReaderType::Pointer elastix::BSplineTransformWithDiffusion< TElastix >::m_FixedSegmentationReader
private

Definition at line 382 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
GrayValueImageType::Pointer elastix::BSplineTransformWithDiffusion< TElastix >::m_GrayValueImage1
private

Definition at line 377 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
GrayValueImageType::Pointer elastix::BSplineTransformWithDiffusion< TElastix >::m_GrayValueImage2
private

Definition at line 378 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
SpacingType elastix::BSplineTransformWithDiffusion< TElastix >::m_GridSpacingFactor
protected

Member variables.

Definition at line 361 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
InterpolatorType::Pointer elastix::BSplineTransformWithDiffusion< TElastix >::m_Interpolator
private

Definition at line 387 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
std::string elastix::BSplineTransformWithDiffusion< TElastix >::m_MovingSegmentationFileName
private

Definition at line 383 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
GrayValueImageType::Pointer elastix::BSplineTransformWithDiffusion< TElastix >::m_MovingSegmentationImage
private

Definition at line 379 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
GrayValueImageReaderType::Pointer elastix::BSplineTransformWithDiffusion< TElastix >::m_MovingSegmentationReader
private

Definition at line 381 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
ResamplerType1::Pointer elastix::BSplineTransformWithDiffusion< TElastix >::m_Resampler1
private

Definition at line 385 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
ResamplerType2::Pointer elastix::BSplineTransformWithDiffusion< TElastix >::m_Resampler2
private

Definition at line 386 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
bool elastix::BSplineTransformWithDiffusion< TElastix >::m_ThresholdBool
private

Definition at line 395 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
GrayValuePixelType elastix::BSplineTransformWithDiffusion< TElastix >::m_ThresholdHU
private

Definition at line 396 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
bool elastix::BSplineTransformWithDiffusion< TElastix >::m_UseFixedSegmentation
private

Definition at line 398 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
bool elastix::BSplineTransformWithDiffusion< TElastix >::m_UseMovingSegmentation
private

Definition at line 397 of file elxBSplineTransformWithDiffusion.h.

template<class TElastix >
bool elastix::BSplineTransformWithDiffusion< TElastix >::m_WriteDiffusionFiles
private

Member variables for writing diffusion files.

Definition at line 393 of file elxBSplineTransformWithDiffusion.h.



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