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itk::DeformationVectorFieldTransform< TScalarType, NDimensions > Class Template Reference

#include <itkDeformationVectorFieldTransform.h>

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Collaboration diagram for itk::DeformationVectorFieldTransform< TScalarType, NDimensions >:
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Public Types

typedef Superclass::ImagePointer CoefficientImagePointer
typedef Superclass::ImageType CoefficientImageType
typedef Superclass::PixelType CoefficientPixelType
typedef
CoefficientVectorImageType::Pointer 
CoefficientVectorImagePointer
typedef Image
< CoefficientVectorPixelType,
itkGetStaticConstMacro(SpaceDimension) > 
CoefficientVectorImageType
typedef Vector< float,
itkGetStaticConstMacro(SpaceDimension) > 
CoefficientVectorPixelType
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::InputCovariantVectorType 
InputCovariantVectorType
typedef Superclass::InputPointType InputPointType
typedef Superclass::InputVectorType InputVectorType
typedef
Superclass::InputVnlVectorType 
InputVnlVectorType
typedef Superclass::JacobianType JacobianType
typedef
Superclass::OutputCovariantVectorType 
OutputCovariantVectorType
typedef Superclass::OutputPointType OutputPointType
typedef
Superclass::OutputVectorType 
OutputVectorType
typedef
Superclass::OutputVnlVectorType 
OutputVnlVectorType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::ScalarType ScalarType
typedef
DeformationVectorFieldTransform 
Self
typedef
AdvancedBSplineDeformableTransform
< TScalarType, NDimensions, 0 > 
Superclass
- Public Types inherited from itk::AdvancedBSplineDeformableTransform< TScalarType, NDimensions, 0 >
typedef SmartPointer< const SelfConstPointer
typedef
WeightsFunctionType::ContinuousIndexType 
ContinuousIndexType
typedef
BSplineInterpolationDerivativeWeightFunction
< ScalarType,
itkGetStaticConstMacro(SpaceDimension),
itkGetStaticConstMacro(SplineOrder) > 
DerivativeWeightsFunctionType
typedef Superclass::DirectionType DirectionType
typedef Superclass::GridOffsetType GridOffsetType
typedef Superclass::ImagePointer ImagePointer
typedef Superclass::ImageType ImageType
typedef Superclass::IndexType IndexType
typedef
Superclass::InputCovariantVectorType 
InputCovariantVectorType
typedef Superclass::InputPointType InputPointType
typedef Superclass::InputVectorType InputVectorType
typedef
Superclass::InputVnlVectorType 
InputVnlVectorType
typedef
Superclass::InternalMatrixType 
InternalMatrixType
typedef
Superclass::JacobianOfSpatialHessianType 
JacobianOfSpatialHessianType
typedef
Superclass::JacobianOfSpatialJacobianType 
JacobianOfSpatialJacobianType
typedef Superclass::JacobianType JacobianType
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
typedef Superclass::OriginType OriginType
typedef
Superclass::OutputCovariantVectorType 
OutputCovariantVectorType
typedef Superclass::OutputPointType OutputPointType
typedef
Superclass::OutputVectorType 
OutputVectorType
typedef
Superclass::OutputVnlVectorType 
OutputVnlVectorType
typedef
Superclass::ParameterIndexArrayType 
ParameterIndexArrayType
typedef Superclass::ParametersType ParametersType
typedef Superclass::PixelType PixelType
typedef SmartPointer< SelfPointer
typedef Superclass::RegionType RegionType
typedef Superclass::ScalarType ScalarType
typedef
AdvancedBSplineDeformableTransform 
Self
typedef Superclass::SizeType SizeType
typedef
BSplineInterpolationSecondOrderDerivativeWeightFunction
< ScalarType,
itkGetStaticConstMacro(SpaceDimension),
itkGetStaticConstMacro(SplineOrder) > 
SODerivativeWeightsFunctionType
typedef Superclass::SpacingType SpacingType
typedef
Superclass::SpatialHessianType 
SpatialHessianType
typedef
Superclass::SpatialJacobianType 
SpatialJacobianType
typedef
AdvancedBSplineDeformableTransformBase
< TScalarType, NDimensions > 
Superclass
typedef
BSplineInterpolationWeightFunction2
< ScalarType,
itkGetStaticConstMacro(SpaceDimension),
itkGetStaticConstMacro(SplineOrder) > 
WeightsFunctionType
typedef
WeightsFunctionType::WeightsType 
WeightsType
- Public Types inherited from itk::AdvancedBSplineDeformableTransformBase< TScalarType, NDimensions >
typedef SmartPointer< const SelfConstPointer
typedef ContinuousIndex
< ScalarType, SpaceDimension > 
ContinuousIndexType
typedef ImageType::DirectionType DirectionType
typedef IndexType GridOffsetType
typedef ImageType::Pointer ImagePointer
typedef Image< PixelType,
itkGetStaticConstMacro(SpaceDimension)> 
ImageType
typedef RegionType::IndexType IndexType
typedef
Superclass::InputCovariantVectorType 
InputCovariantVectorType
typedef Superclass::InputPointType InputPointType
typedef Superclass::InputVectorType InputVectorType
typedef
Superclass::InputVnlVectorType 
InputVnlVectorType
typedef
Superclass::InternalMatrixType 
InternalMatrixType
typedef
Superclass::JacobianOfSpatialHessianType 
JacobianOfSpatialHessianType
typedef
Superclass::JacobianOfSpatialJacobianType 
JacobianOfSpatialJacobianType
typedef Superclass::JacobianType JacobianType
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
typedef ImageType::PointType OriginType
typedef
Superclass::OutputCovariantVectorType 
OutputCovariantVectorType
typedef Superclass::OutputPointType OutputPointType
typedef
Superclass::OutputVectorType 
OutputVectorType
typedef
Superclass::OutputVnlVectorType 
OutputVnlVectorType
typedef Array< unsigned long > ParameterIndexArrayType
typedef Superclass::ParametersType ParametersType
typedef ParametersType::ValueType PixelType
typedef SmartPointer< SelfPointer
typedef ImageRegion
< itkGetStaticConstMacro(SpaceDimension) > 
RegionType
typedef Superclass::ScalarType ScalarType
typedef
AdvancedBSplineDeformableTransformBase 
Self
typedef RegionType::SizeType SizeType
typedef ImageType::SpacingType SpacingType
typedef
Superclass::SpatialHessianType 
SpatialHessianType
typedef
Superclass::SpatialJacobianType 
SpatialJacobianType
typedef AdvancedTransform
< TScalarType, NDimensions,
NDimensions > 
Superclass
- Public Types inherited from itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::InputCovariantVectorType 
InputCovariantVectorType
typedef Superclass::InputPointType InputPointType
typedef Superclass::InputVectorType InputVectorType
typedef
Superclass::InputVnlVectorType 
InputVnlVectorType
typedef
SpatialJacobianType::InternalMatrixType 
InternalMatrixType
typedef std::vector
< SpatialHessianType
JacobianOfSpatialHessianType
typedef std::vector
< SpatialJacobianType
JacobianOfSpatialJacobianType
typedef Superclass::JacobianType JacobianType
typedef std::vector< unsigned
long > 
NonZeroJacobianIndicesType
typedef
Superclass::OutputCovariantVectorType 
OutputCovariantVectorType
typedef Superclass::OutputPointType OutputPointType
typedef
Superclass::OutputVectorType 
OutputVectorType
typedef
Superclass::OutputVnlVectorType 
OutputVnlVectorType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::ScalarType ScalarType
typedef AdvancedTransform Self
typedef FixedArray< Matrix
< ScalarType,
InputSpaceDimension,
InputSpaceDimension >
, OutputSpaceDimension > 
SpatialHessianType
typedef Matrix< ScalarType,
OutputSpaceDimension,
InputSpaceDimension > 
SpatialJacobianType
typedef Transform< TScalarType,
NInputDimensions,
NOutputDimensions > 
Superclass

Public Member Functions

virtual const char * GetClassName () const
virtual void GetCoefficientVectorImage (CoefficientVectorImagePointer &vecImage) const
 itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)
 itkStaticConstMacro (SplineOrder, unsigned int, Superclass::SplineOrder)
virtual void SetCoefficientVectorImage (const CoefficientVectorImageType *vecImage)
- Public Member Functions inherited from itk::AdvancedBSplineDeformableTransform< TScalarType, NDimensions, 0 >
virtual const JacobianTypeGetJacobian (const InputPointType &point) const
virtual void GetJacobian (const InputPointType &ipp, WeightsType &weights, ParameterIndexArrayType &indices) const
virtual void GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &) const
virtual void GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
unsigned int GetNumberOfAffectedWeights (void) const
virtual unsigned long GetNumberOfNonZeroJacobianIndices (void) const
unsigned long GetNumberOfWeights (void) const
virtual void GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const
virtual void GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const
 itkStaticConstMacro (SplineOrder, unsigned int, VSplineOrder)
virtual void SetGridRegion (const RegionType &region)
OutputPointType TransformPoint (const InputPointType &point) const
virtual void TransformPoint (const InputPointType &inputPoint, OutputPointType &outputPoint, WeightsType &weights, ParameterIndexArrayType &indices, bool &inside) const
- Public Member Functions inherited from itk::AdvancedBSplineDeformableTransformBase< TScalarType, NDimensions >
virtual const ImagePointerGetCoefficientImage (void) const
virtual const ParametersTypeGetFixedParameters (void) const
virtual DirectionType GetGridDirection () const
virtual OriginType GetGridOrigin () const
virtual RegionType GetGridRegion () const
virtual SpacingType GetGridSpacing () const
virtual unsigned int GetNumberOfParameters (void) const
virtual unsigned int GetNumberOfParametersPerDimension (void) const
virtual const ParametersTypeGetParameters (void) const
virtual const RegionTypeGetValidRegion ()
virtual bool IsLinear (void) const
virtual void SetCoefficientImage (ImagePointer images[])
void SetFixedParameters (const ParametersType &parameters)
virtual void SetGridDirection (const DirectionType &direction)
virtual void SetGridOrigin (const OriginType &origin)
virtual void SetGridSpacing (const SpacingType &spacing)
void SetIdentity (void)
void SetParameters (const ParametersType &parameters)
void SetParametersByValue (const ParametersType &parameters)
virtual OutputCovariantVectorType TransformCovariantVector (const InputCovariantVectorType &) const
virtual OutputVectorType TransformVector (const InputVectorType &) const
virtual OutputVnlVectorType TransformVector (const InputVnlVectorType &) const
- Public Member Functions inherited from itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >
virtual bool GetHasNonZeroJacobianOfSpatialHessian () const
virtual bool GetHasNonZeroSpatialHessian () const
 itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)
 itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)

Static Public Member Functions

static Pointer New ()

Protected Member Functions

 DeformationVectorFieldTransform ()
virtual ~DeformationVectorFieldTransform ()
- Protected Member Functions inherited from itk::AdvancedBSplineDeformableTransform< TScalarType, NDimensions, 0 >
 AdvancedBSplineDeformableTransform ()
virtual void ComputeNonZeroJacobianIndices (NonZeroJacobianIndicesType &nonZeroJacobianIndices, const RegionType &supportRegion) const
virtual WeightsFunctionTypeGetWeightsFunction ()
virtual void PrintSelf (std::ostream &os, Indent indent) const
virtual void SetWeightsFunction (WeightsFunctionType *_arg)
void WrapAsImages (void)
virtual ~AdvancedBSplineDeformableTransform ()
- Protected Member Functions inherited from itk::AdvancedBSplineDeformableTransformBase< TScalarType, NDimensions >
 AdvancedBSplineDeformableTransformBase ()
virtual bool InsideValidRegion (const ContinuousIndexType &index) const
void TransformPointToContinuousGridIndex (const InputPointType &point, ContinuousIndexType &index) const
void UpdateGridOffsetTable (void)
virtual ~AdvancedBSplineDeformableTransformBase ()
- Protected Member Functions inherited from itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >
 AdvancedTransform ()
 AdvancedTransform (unsigned int Dimension, unsigned int NumberOfParameters)
virtual ~AdvancedTransform ()

Private Member Functions

 DeformationVectorFieldTransform (const Self &)
void operator= (const Self &)

Private Attributes

CoefficientImagePointer m_Images [SpaceDimension]

Additional Inherited Members

- Protected Types inherited from itk::AdvancedBSplineDeformableTransform< TScalarType, NDimensions, 0 >
typedef
Superclass::JacobianImageType 
JacobianImageType
typedef
Superclass::JacobianPixelType 
JacobianPixelType
- Protected Attributes inherited from itk::AdvancedBSplineDeformableTransform< TScalarType, NDimensions, 0 >
std::vector< typename
DerivativeWeightsFunctionType::Pointer
m_DerivativeWeightsFunctions
std::vector< std::vector
< typename
SODerivativeWeightsFunctionType::Pointer > > 
m_SODerivativeWeightsFunctions
WeightsFunctionType::Pointer m_WeightsFunction

Detailed Description

template<class TScalarType = double, unsigned int NDimensions = 3>
class itk::DeformationVectorFieldTransform< TScalarType, NDimensions >

An itk transform based on a DeformationVectorField.

This class makes it easy to set a deformation vector field as a Transform-object.

The class inherits from the 0th-order AdvancedBSplineDeformableTransform, and converts a VectorImage to the B-spline CoefficientImage.

This is useful if you know for example how to deform each voxel in an image and want to apply it to that image.

Note
Better use the DeformationFieldInterpolatingTransform. It is more flexible, since it allows runtime specification of the spline order.

Definition at line 43 of file itkDeformationVectorFieldTransform.h.

Member Typedef Documentation

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::ImagePointer itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::CoefficientImagePointer

Definition at line 81 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::ImageType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::CoefficientImageType

Definition at line 80 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::PixelType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::CoefficientPixelType

Parameters as SpaceDimension number of images.

Definition at line 79 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef CoefficientVectorImageType::Pointer itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::CoefficientVectorImagePointer

Definition at line 88 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Image< CoefficientVectorPixelType, itkGetStaticConstMacro( SpaceDimension ) > itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::CoefficientVectorImageType

Definition at line 87 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Vector< float, itkGetStaticConstMacro( SpaceDimension ) > itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::CoefficientVectorPixelType

Typedef's for VectorImage.

Definition at line 85 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef SmartPointer< const Self > itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::ConstPointer

Definition at line 53 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::InputCovariantVectorType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::InputCovariantVectorType

Definition at line 71 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::InputPointType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::InputPointType

Definition at line 75 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::InputVectorType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::InputVectorType

Definition at line 69 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::InputVnlVectorType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::InputVnlVectorType

Definition at line 73 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::JacobianType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::JacobianType

Definition at line 68 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::OutputCovariantVectorType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::OutputCovariantVectorType

Definition at line 72 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::OutputPointType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::OutputPointType

Definition at line 76 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::OutputVectorType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::OutputVectorType

Definition at line 70 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::OutputVnlVectorType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::OutputVnlVectorType

Definition at line 74 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::ParametersType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::ParametersType

Definition at line 67 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef SmartPointer< Self > itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::Pointer

Definition at line 52 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef Superclass::ScalarType itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::ScalarType

Typedef's inherited from Superclass.

Definition at line 66 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef DeformationVectorFieldTransform itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::Self

Standard class typedefs.

Definition at line 49 of file itkDeformationVectorFieldTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3>
typedef AdvancedBSplineDeformableTransform< TScalarType, NDimensions, 0 > itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::Superclass

Definition at line 51 of file itkDeformationVectorFieldTransform.h.

Constructor & Destructor Documentation

template<class TScalarType = double, unsigned int NDimensions = 3>
itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::DeformationVectorFieldTransform ( )
protected

The constructor.

template<class TScalarType = double, unsigned int NDimensions = 3>
virtual itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::~DeformationVectorFieldTransform ( )
protectedvirtual

The destructor.

template<class TScalarType = double, unsigned int NDimensions = 3>
itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::DeformationVectorFieldTransform ( const Self )
private

The private constructor.

Member Function Documentation

template<class TScalarType = double, unsigned int NDimensions = 3>
virtual const char* itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::AdvancedBSplineDeformableTransform< TScalarType, NDimensions, 0 >.

template<class TScalarType = double, unsigned int NDimensions = 3>
virtual void itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::GetCoefficientVectorImage ( CoefficientVectorImagePointer vecImage) const
virtual

Get the coefficient image as a vector image. The vector image is created only on demand. The caller is expected to provide a smart pointer to the resulting image; this stresses the fact that this method does not return a member variable, like most Get... methods.

template<class TScalarType = double, unsigned int NDimensions = 3>
itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::itkStaticConstMacro ( SpaceDimension  ,
unsigned  int,
NDimensions   
)

Dimension of the domain space.

Reimplemented from itk::AdvancedBSplineDeformableTransform< TScalarType, NDimensions, 0 >.

template<class TScalarType = double, unsigned int NDimensions = 3>
itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::itkStaticConstMacro ( SplineOrder  ,
unsigned  int,
Superclass::SplineOrder   
)
template<class TScalarType = double, unsigned int NDimensions = 3>
static Pointer itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::New ( )
static

Method for creation through the object factory.

Reimplemented from itk::AdvancedBSplineDeformableTransform< TScalarType, NDimensions, 0 >.

template<class TScalarType = double, unsigned int NDimensions = 3>
void itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::operator= ( const Self )
private

The private copy constructor.

template<class TScalarType = double, unsigned int NDimensions = 3>
virtual void itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::SetCoefficientVectorImage ( const CoefficientVectorImageType vecImage)
virtual

Set the coefficient image as a deformation field. The superclass provides a similar function (SetCoeffficientImage), but this function expects an array of nr_of_dim scalar images. The SetCoefficientVectorImage method accepts a VectorImage, which is often more convenient. The method internally just converts this vector image to nr_of_dim scalar images and passes it on to the SetCoefficientImage function.

Field Documentation

template<class TScalarType = double, unsigned int NDimensions = 3>
CoefficientImagePointer itk::DeformationVectorFieldTransform< TScalarType, NDimensions >::m_Images[SpaceDimension]
private

Member variables.

Definition at line 124 of file itkDeformationVectorFieldTransform.h.



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