Public Types |
typedef
BSplineTransformBaseType::Pointer | BSplineTransformBasePointer |
typedef
itk::AdvancedBSplineDeformableTransformBase
< typename elx::TransformBase
< TElastix >::CoordRepType,
itkGetStaticConstMacro(SpaceDimension)> | BSplineTransformBaseType |
typedef
itk::AdvancedBSplineDeformableTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
itkGetStaticConstMacro(SpaceDimension), 3 > | BSplineTransformCubicType |
typedef
itk::AdvancedBSplineDeformableTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
itkGetStaticConstMacro(SpaceDimension), 1 > | BSplineTransformLinearType |
typedef
itk::AdvancedBSplineDeformableTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
itkGetStaticConstMacro(SpaceDimension), 2 > | BSplineTransformQuadraticType |
typedef
Superclass2::CombinationTransformType | CombinationTransformType |
typedef
Superclass2::ConfigurationPointer | ConfigurationPointer |
typedef
Superclass2::ConfigurationType | ConfigurationType |
typedef SmartPointer< const Self > | ConstPointer |
typedef
BSplineTransformBaseType::ContinuousIndexType | ContinuousIndexType |
typedef Superclass2::CoordRepType | CoordRepType |
typedef
itk::CyclicBSplineDeformableTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
itkGetStaticConstMacro(SpaceDimension), 3 > | CyclicBSplineTransformCubicType |
typedef
itk::CyclicBSplineDeformableTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
itkGetStaticConstMacro(SpaceDimension), 1 > | CyclicBSplineTransformLinearType |
typedef
itk::CyclicBSplineDeformableTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
itkGetStaticConstMacro(SpaceDimension), 2 > | CyclicBSplineTransformQuadraticType |
typedef
CyclicGridScheduleComputer
< CoordRepType, SpaceDimension > | CyclicGridScheduleComputerType |
typedef
BSplineTransformBaseType::DirectionType | DirectionType |
typedef Superclass2::ElastixPointer | ElastixPointer |
typedef Superclass2::ElastixType | ElastixType |
typedef Superclass2::FixedImageType | FixedImageType |
typedef
GridScheduleComputerType::Pointer | GridScheduleComputerPointer |
typedef GridScheduleComputer
< CoordRepType, SpaceDimension > | GridScheduleComputerType |
typedef
GridScheduleComputerType::VectorGridSpacingFactorType | GridScheduleType |
typedef GridUpsamplerType::Pointer | GridUpsamplerPointer |
typedef
UpsampleBSplineParametersFilter
< ParametersType, ImageType > | GridUpsamplerType |
typedef
BSplineTransformBaseType::ImagePointer | ImagePointer |
typedef
BSplineTransformBaseType::ImageType | ImageType |
typedef
BSplineTransformBaseType::IndexType | IndexType |
typedef
Superclass1::InputCovariantVectorType | InputCovariantVectorType |
typedef Superclass1::InputPointType | InputPointType |
typedef
Superclass1::InputVectorType | InputVectorType |
typedef
Superclass1::InputVnlVectorType | InputVnlVectorType |
typedef Superclass2::ITKBaseType | ITKBaseType |
typedef Superclass1::JacobianType | JacobianType |
typedef
Superclass2::MovingImageType | MovingImageType |
typedef
BSplineTransformBaseType::OriginType | OriginType |
typedef
Superclass1::OutputCovariantVectorType | OutputCovariantVectorType |
typedef
Superclass1::OutputPointType | OutputPointType |
typedef
Superclass1::OutputVectorType | OutputVectorType |
typedef
Superclass1::OutputVnlVectorType | OutputVnlVectorType |
typedef
BSplineTransformBaseType::ParameterIndexArrayType | ParameterIndexArrayType |
typedef Superclass1::ParametersType | ParametersType |
typedef
BSplineTransformBaseType::PixelType | PixelType |
typedef SmartPointer< Self > | Pointer |
typedef
BSplineTransformBaseType::RegionType | RegionType |
typedef
Superclass2::RegistrationPointer | RegistrationPointer |
typedef
Superclass2::RegistrationType | RegistrationType |
typedef Superclass1::ScalarType | ScalarType |
typedef AdvancedBSplineTransform | Self |
typedef
BSplineTransformBaseType::SizeType | SizeType |
typedef
BSplineTransformBaseType::SpacingType | SpacingType |
typedef
itk::AdvancedCombinationTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
elx::TransformBase< TElastix >
::FixedImageDimension > | Superclass1 |
typedef elx::TransformBase
< TElastix > | Superclass2 |
typedef SmartPointer< const Self > | ConstPointer |
typedef
CurrentTransformType::Pointer | CurrentTransformPointer |
typedef Superclass | CurrentTransformType |
typedef const JacobianType
&(Self::* | GetJacobianFunctionPointer )(const InputPointType &) const |
typedef void(Self::* | GetJacobianOfSpatialHessianFunctionPointer )(const InputPointType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const |
typedef void(Self::* | GetJacobianOfSpatialHessianFunctionPointer2 )(const InputPointType &, SpatialHessianType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const |
typedef void(Self::* | GetJacobianOfSpatialJacobianFunctionPointer )(const InputPointType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const |
typedef void(Self::* | GetJacobianOfSpatialJacobianFunctionPointer2 )(const InputPointType &, SpatialJacobianType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const |
typedef void(Self::* | GetSparseJacobianFunctionPointer )(const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
typedef void(Self::* | GetSpatialHessianFunctionPointer )(const InputPointType &, SpatialHessianType &) const |
typedef void(Self::* | GetSpatialJacobianFunctionPointer )(const InputPointType &, SpatialJacobianType &) const |
typedef
InitialTransformType::ConstPointer | InitialTransformConstPointer |
typedef
InitialTransformType::Pointer | InitialTransformPointer |
typedef Superclass | InitialTransformType |
typedef
Superclass::InputCovariantVectorType | InputCovariantVectorType |
typedef Superclass::InputPointType | InputPointType |
typedef Superclass::InputVectorType | InputVectorType |
typedef
Superclass::InputVnlVectorType | InputVnlVectorType |
typedef
Superclass::InternalMatrixType | InternalMatrixType |
typedef
Superclass::JacobianOfSpatialHessianType | JacobianOfSpatialHessianType |
typedef
Superclass::JacobianOfSpatialJacobianType | JacobianOfSpatialJacobianType |
typedef Superclass::JacobianType | JacobianType |
typedef
Superclass::NonZeroJacobianIndicesType | NonZeroJacobianIndicesType |
typedef
Superclass::OutputCovariantVectorType | OutputCovariantVectorType |
typedef Superclass::OutputPointType | OutputPointType |
typedef
Superclass::OutputVectorType | OutputVectorType |
typedef
Superclass::OutputVnlVectorType | OutputVnlVectorType |
typedef Superclass::ParametersType | ParametersType |
typedef SmartPointer< Self > | Pointer |
typedef Superclass::ScalarType | ScalarType |
typedef
AdvancedCombinationTransform | Self |
typedef
Superclass::SpatialHessianType | SpatialHessianType |
typedef
Superclass::SpatialJacobianType | SpatialJacobianType |
typedef AdvancedTransform
< elx::TransformBase< TElastix >
::CoordRepType, NDimensions,
NDimensions > | Superclass |
typedef OutputPointType(Self::* | TransformPointFunctionPointer )(const InputPointType &) const |
typedef SmartPointer< const Self > | ConstPointer |
typedef
Superclass::InputCovariantVectorType | InputCovariantVectorType |
typedef Superclass::InputPointType | InputPointType |
typedef Superclass::InputVectorType | InputVectorType |
typedef
Superclass::InputVnlVectorType | InputVnlVectorType |
typedef
SpatialJacobianType::InternalMatrixType | InternalMatrixType |
typedef std::vector
< SpatialHessianType > | JacobianOfSpatialHessianType |
typedef std::vector
< SpatialJacobianType > | JacobianOfSpatialJacobianType |
typedef Superclass::JacobianType | JacobianType |
typedef std::vector< unsigned
long > | NonZeroJacobianIndicesType |
typedef
Superclass::OutputCovariantVectorType | OutputCovariantVectorType |
typedef Superclass::OutputPointType | OutputPointType |
typedef
Superclass::OutputVectorType | OutputVectorType |
typedef
Superclass::OutputVnlVectorType | OutputVnlVectorType |
typedef Superclass::ParametersType | ParametersType |
typedef SmartPointer< Self > | Pointer |
typedef Superclass::ScalarType | ScalarType |
typedef AdvancedTransform | Self |
typedef FixedArray< Matrix
< ScalarType,
InputSpaceDimension,
InputSpaceDimension >
, OutputSpaceDimension > | SpatialHessianType |
typedef Matrix< ScalarType,
OutputSpaceDimension,
InputSpaceDimension > | SpatialJacobianType |
typedef Transform
< elx::TransformBase< TElastix >
::CoordRepType,
NInputDimensions,
NOutputDimensions > | Superclass |
typedef
itk::AdvancedCombinationTransform
< CoordRepType,
itkGetStaticConstMacro(FixedImageDimension) > | CombinationTransformType |
typedef
ConfigurationType::CommandLineArgumentMapType | CommandLineArgumentMapType |
typedef
ConfigurationType::CommandLineEntryType | CommandLineEntryType |
typedef ComponentDatabase | ComponentDatabaseType |
typedef
ComponentDatabaseType::ComponentDescriptionType | ComponentDescriptionType |
typedef
Superclass::ConfigurationPointer | ConfigurationPointer |
typedef
Superclass::ConfigurationType | ConfigurationType |
typedef ElastixType::CoordRepType | CoordRepType |
typedef Superclass::ElastixPointer | ElastixPointer |
typedef Superclass::ElastixType | ElastixType |
typedef ElastixType::FixedImageType | FixedImageType |
typedef
CombinationTransformType::InitialTransformType | InitialTransformType |
typedef ITKBaseType::InputPointType | InputPointType |
typedef itk::AdvancedTransform
< CoordRepType,
itkGetStaticConstMacro(FixedImageDimension),
itkGetStaticConstMacro(MovingImageDimension) > | ITKBaseType |
typedef
RegistrationType::ITKBaseType | ITKRegistrationType |
typedef
ElastixType::MovingImageType | MovingImageType |
typedef itk::Object | ObjectType |
typedef
ITKRegistrationType::OptimizerType | OptimizerType |
typedef
ITKBaseType::OutputPointType | OutputPointType |
typedef ITKBaseType::ParametersType | ParametersType |
typedef elx::ProgressCommand | ProgressCommandType |
typedef
ComponentDatabase::PtrToCreator | PtrToCreator |
typedef
Superclass::RegistrationPointer | RegistrationPointer |
typedef
Superclass::RegistrationType | RegistrationType |
typedef OptimizerType::ScalesType | ScalesType |
typedef TransformBase | Self |
typedef BaseComponentSE< TElastix > | Superclass |
typedef ParametersType::ValueType | ValueType |
typedef
ElastixType::ConfigurationPointer | ConfigurationPointer |
typedef
ElastixType::ConfigurationType | ConfigurationType |
typedef ElastixType::Pointer | ElastixPointer |
typedef TElastix | ElastixType |
typedef RegistrationType * | RegistrationPointer |
typedef
ElastixType::RegistrationBaseType | RegistrationType |
typedef BaseComponentSE | Self |
typedef BaseComponent | Superclass |
Public Member Functions |
virtual int | BeforeAll (void) |
virtual void | BeforeEachResolution (void) |
virtual void | BeforeRegistration (void) |
| elxClassNameMacro ("BSplineTransform") |
virtual const char * | GetClassName () const |
virtual void | IncreaseScale (void) |
virtual void | InitializeTransform (void) |
| itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension) |
virtual void | ReadFromFile (void) |
virtual void | SetOptimizerScales (const unsigned int edgeWidth) |
virtual void | WriteToFile (const ParametersType ¶m) const |
virtual CurrentTransformType * | GetCurrentTransform () |
virtual const ParametersType & | GetFixedParameters (void) const |
virtual bool | GetHasNonZeroSpatialHessian (void) const |
virtual const
InitialTransformType * | GetInitialTransform () |
virtual bool | GetInverse (Self *inverse) const |
virtual const JacobianType & | GetJacobian (const InputPointType &point) const |
virtual void | GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual unsigned long | GetNumberOfNonZeroJacobianIndices (void) const |
virtual unsigned int | GetNumberOfParameters (void) const |
virtual const ParametersType & | GetParameters (void) const |
virtual void | GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const |
virtual void | GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const |
virtual bool | GetUseAddition () const |
virtual bool | GetUseComposition () const |
virtual bool | HasNonZeroJacobianOfSpatialHessian (void) const |
virtual bool | IsLinear (void) const |
| itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions) |
virtual void | SetCurrentTransform (CurrentTransformType *_arg) |
virtual void | SetFixedParameters (const ParametersType &fixedParam) |
virtual void | SetInitialTransform (const InitialTransformType *_arg) |
virtual void | SetParameters (const ParametersType ¶m) |
virtual void | SetParametersByValue (const ParametersType ¶m) |
virtual void | SetUseAddition (bool _arg) |
virtual void | SetUseComposition (bool _arg) |
virtual OutputPointType | TransformPoint (const InputPointType &point) const |
virtual bool | GetHasNonZeroJacobianOfSpatialHessian () const |
virtual void | GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const |
virtual void | GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const |
| itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions) |
| itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions) |
virtual void | AfterRegistrationBase (void) |
virtual int | BeforeAllBase (void) |
virtual int | BeforeAllTransformix (void) |
virtual void | BeforeRegistrationBase (void) |
virtual void | ComputeDeterminantOfSpatialJacobian (void) const |
virtual void | ComputeSpatialJacobian (void) const |
virtual const
CombinationTransformType * | GetAsCombinationTransform (void) const |
virtual CombinationTransformType * | GetAsCombinationTransform (void) |
virtual ITKBaseType * | GetAsITKBaseType (void) |
virtual const ITKBaseType * | GetAsITKBaseType (void) const |
virtual const
InitialTransformType * | GetInitialTransform (void) const |
virtual const char * | GetTransformParametersFileName () const |
| itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension) |
| itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension) |
virtual void | ReadInitialTransformFromFile (const char *transformParameterFileName) |
virtual void | SetFinalParameters (void) |
virtual void | SetInitialTransform (InitialTransformType *_arg) |
virtual void | SetReadWriteTransformParameters (const bool _arg) |
virtual void | SetTransformParametersFileName (const char *filename) |
virtual void | TransformPoints (void) const |
virtual void | TransformPointsAllPoints (void) const |
virtual void | TransformPointsSomePoints (const std::string filename) const |
virtual void | TransformPointsSomePointsVTK (const std::string filename) const |
virtual void | WriteToFile (void) const |
virtual ConfigurationType * | GetConfiguration (void) const |
virtual ElastixType * | GetElastix (void) const |
virtual RegistrationPointer | GetRegistration (void) const |
virtual void | SetConfiguration (ConfigurationType *_arg) |
virtual void | SetElastix (ElastixType *_arg) |
virtual void | AfterEachIteration (void) |
virtual void | AfterEachIterationBase (void) |
virtual void | AfterEachResolution (void) |
virtual void | AfterEachResolutionBase (void) |
virtual void | AfterRegistration (void) |
virtual void | BeforeEachResolutionBase (void) |
virtual const char * | elxGetClassName (void) const |
virtual const char * | GetComponentLabel (void) const |
virtual void | SetComponentLabel (const char *label, unsigned int idx) |
Protected Member Functions |
| AdvancedBSplineTransform () |
virtual void | PreComputeGridInformation (void) |
virtual | ~AdvancedBSplineTransform () |
| AdvancedCombinationTransform () |
const JacobianType & | GetJacobianNoCurrentTransform (const InputPointType &point) const |
void | GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
const JacobianType & | GetJacobianNoInitialTransform (const InputPointType &point) const |
void | GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
void | GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
virtual void | GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
void | GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
const JacobianType & | GetJacobianUseAddition (const InputPointType &point) const |
void | GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
const JacobianType & | GetJacobianUseComposition (const InputPointType &point) const |
void | GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
void | GetSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh) const |
void | GetSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh) const |
void | GetSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh) const |
void | GetSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh) const |
void | GetSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj) const |
void | GetSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj) const |
void | GetSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj) const |
void | GetSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj) const |
virtual void | NoCurrentTransformSet (void) const throw (ExceptionObject) |
OutputPointType | TransformPointNoCurrentTransform (const InputPointType &point) const |
OutputPointType | TransformPointNoInitialTransform (const InputPointType &point) const |
OutputPointType | TransformPointUseAddition (const InputPointType &point) const |
OutputPointType | TransformPointUseComposition (const InputPointType &point) const |
virtual void | UpdateCombinationMethod (void) |
virtual | ~AdvancedCombinationTransform () |
| AdvancedTransform () |
| AdvancedTransform (unsigned int Dimension, unsigned int NumberOfParameters) |
virtual | ~AdvancedTransform () |
void | AutomaticScalesEstimation (ScalesType &scales) const |
| TransformBase () |
virtual | ~TransformBase () |
| BaseComponentSE () |
virtual | ~BaseComponentSE () |
| BaseComponent () |
virtual | ~BaseComponent () |
template<class TElastix>
class elastix::AdvancedBSplineTransform< TElastix >
A transform based on the itkAdvancedBSplineTransform.
This transform is a B-spline transformation, commonly used for nonrigid registration.
The parameters used in this class are:
- Parameters:
- Transform: Select this transform as follows:
(Transform "BSplineTransform")
- Parameters:
- BSplineTransformSplineOrder: choose a B-spline order 1,2, or 3.
example: (BSplineTransformSplineOrder 3)
Default value: 3 (cubic B-splines).
- Parameters:
- FinalGridSpacingInVoxels: the grid spacing of the B-spline transform for each dimension.
example: (FinalGridSpacingInVoxels 8.0 8.0 8.0)
If only one argument is given, that factor is used for each dimension. The spacing is not in millimeters, but in "voxel size units". The default is 16.0 in every dimension.
- Parameters:
- FinalGridSpacingInPhysicalUnits: the grid spacing of the B-spline transform for each dimension.
example: (FinalGridSpacingInPhysicalUnits 8.0 8.0 8.0)
If only one argument is given, that factor is used for each dimension. The spacing is specified in millimeters. If not specified, the FinalGridSpacingInVoxels is used, or the FinalGridSpacing, to compute a FinalGridSpacingInPhysicalUnits. If those are not specified, the default value for FinalGridSpacingInVoxels is used to compute a FinalGridSpacingInPhysicalUnits.
- Parameters:
- GridSpacingSchedule: the grid spacing downsampling factors for the B-spline transform for each dimension and each resolution.
example: (GridSpacingSchedule 4.0 4.0 2.0 2.0 1.0 1.0)
Which is an example for a 2D image, using 3 resolutions.
For convenience, you may also specify only one value for each resolution:
example: (GridSpacingSchedule 4.0 2.0 1.0 )
which is equivalent to the example above.
- Parameters:
- PassiveEdgeWidth: the width of a band of control points at the border of the B-spline coefficient image that should remain passive during optimisation.
Can be specified for each resolution.
example: (PassiveEdgeWidth 0 1 2)
The default is zero for all resolutions. A value of 4 will avoid all deformations at the edge of the image. Make sure that 2*PassiveEdgeWidth < ControlPointGridSize in each dimension.
- Parameters:
- UseCyclicTransform: use the cyclic version of the B-spline transform which ensures that the B-spline polynomials wrap around in the slowest varying dimension. This is useful for dynamic imaging data in which the motion is assumed to be cyclic, for example in ECG-gated or respiratory gated CTA. For more information see the paper: Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press.
The transform parameters necessary for transformix, additionally defined by this class, are:
- Transform Parameters:
- GridSize: stores the size of the B-spline grid.
example: (GridSize 16 16 16)
- Transform Parameters:
- GridIndex: stores the index of the B-spline grid.
example: (GridIndex 0 0 0)
- Transform Parameters:
- GridSpacing: stores the spacing of the B-spline grid.
example: (GridSpacing 16.0 16.0 16.0)
- Transform Parameters:
- GridOrigin: stores the origin of the B-spline grid.
example: (GridOrigin 0.0 0.0 0.0)
- Transform Parameters:
- GridDirection: stores the direction cosines of the B-spline grid.
example: (GridDirection 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.1)
- Transform Parameters:
- BSplineTransformSplineOrder: stores the B-spline order 1,2, or 3.
example: (BSplineTransformSplineOrder 3)
Default value: 3 (cubic B-splines).
- Transform Parameters:
- UseCyclicTransform: use the cyclic version of the B-spline transform which ensures that the B-spline polynomials wrap around in the slowest varying dimension. This is useful for dynamic imaging data in which the motion is assumed to be cyclic, for example in ECG-gated or respiratory gated CTA. For more information see the paper: Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press.
- Todo:
- It is unsure what happens when one of the image dimensions has length 1.
Definition at line 105 of file elxAdvancedBSplineTransform.h.