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elastix::TransformRigidityPenalty< TElastix > Class Template Reference

#include <elxTransformRigidityPenaltyTerm.h>

Inheritance diagram for elastix::TransformRigidityPenalty< TElastix >:
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Collaboration diagram for elastix::TransformRigidityPenalty< TElastix >:
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Public Types

typedef
Superclass1::CoefficientImageType 
CoefficientImageType
typedef
Superclass2::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass2::ConfigurationType 
ConfigurationType
typedef SmartPointer< const SelfConstPointer
typedef
Superclass1::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass1::DerivativeType DerivativeType
typedef Superclass2::ElastixPointer ElastixPointer
typedef Superclass2::ElastixType ElastixType
typedef
Superclass1::FixedImageConstPointer 
FixedImageConstPointer
typedef
Superclass1::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
typedef
Superclass1::FixedImageLimiterType 
FixedImageLimiterType
typedef
Superclass1::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass1::FixedImageMaskType 
FixedImageMaskType
typedef
Superclass1::FixedImagePixelType 
FixedImagePixelType
typedef
Superclass1::FixedImageRegionType 
FixedImageRegionType
typedef Superclass1::FixedImageType FixedImageType
typedef
Superclass1::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass1::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass1::GradientImagePointer 
GradientImagePointer
typedef
Superclass1::GradientImageType 
GradientImageType
typedef
Superclass1::GradientPixelType 
GradientPixelType
typedef
Superclass1::ImageSampleContainerPointer 
ImageSampleContainerPointer
typedef
Superclass1::ImageSampleContainerType 
ImageSampleContainerType
typedef
Superclass1::ImageSamplerPointer 
ImageSamplerPointer
typedef
Superclass1::ImageSamplerType 
ImageSamplerType
typedef Superclass1::InputPointType InputPointType
typedef
Superclass1::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass1::InterpolatorType 
InterpolatorType
typedef Superclass2::ITKBaseType ITKBaseType
typedef Superclass1::MeasureType MeasureType
typedef
Superclass1::MovingImageConstPointer 
MovingImageConstPointer
typedef
Superclass1::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
typedef
Superclass1::MovingImageLimiterType 
MovingImageLimiterType
typedef
Superclass1::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass1::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass1::MovingImagePixelType 
MovingImagePixelType
typedef
Superclass1::MovingImageRegionType 
MovingImageRegionType
typedef
Superclass1::MovingImageType 
MovingImageType
typedef
Superclass1::OutputPointType 
OutputPointType
typedef Superclass1::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass1::RealType RealType
typedef
Superclass2::RegistrationPointer 
RegistrationPointer
typedef
Superclass2::RegistrationType 
RegistrationType
typedef TransformRigidityPenalty Self
typedef
TransformRigidityPenaltyTerm
< typename MetricBase
< TElastix >::FixedImageType,
double
Superclass1
typedef MetricBase< TElastix > Superclass2
typedef TimerType::Pointer TimerPointer
typedef tmr::Timer TimerType
typedef
Superclass1::TransformJacobianType 
TransformJacobianType
typedef
Superclass1::TransformParametersType 
TransformParametersType
typedef
Superclass1::TransformPointer 
TransformPointer
typedef Superclass1::TransformType TransformType
- Public Types inherited from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef
BSplineTransformType::Pointer 
BSplineTransformPointer
typedef
AdvancedBSplineDeformableTransform
< ScalarType,
FixedImageDimension, 3 > 
BSplineTransformType
typedef ImageRegionIterator
< CoefficientImageType
CoefficientImageIteratorType
typedef
CoefficientImageType::Pointer 
CoefficientImagePointer
typedef
CoefficientImageType::SpacingType 
CoefficientImageSpacingType
typedef
BSplineTransformType::ImageType 
CoefficientImageType
typedef
AdvancedCombinationTransform
< ScalarType,
FixedImageDimension > 
CombinationTransformType
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass::DerivativeType DerivativeType
typedef
Superclass::DerivativeValueType 
DerivativeValueType
typedef DilateFilterType::Pointer DilateFilterPointer
typedef
GrayscaleDilateImageFilter
< RigidityImageType,
RigidityImageType,
StructuringElementType
DilateFilterType
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
typedef
Superclass::FixedImagePointer 
FixedImagePointer
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
typedef Superclass::FixedImageType FixedImageType
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass::GradientImagePointer 
GradientImagePointer
typedef
Superclass::GradientImageType 
GradientImageType
typedef
Superclass::GradientPixelType 
GradientPixelType
typedef
BSplineTransformType::SpacingType 
GridSpacingType
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
typedef Superclass::InputPointType InputPointType
typedef
Superclass::InternalMatrixType 
InternalMatrixType
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass::InterpolatorType 
InterpolatorType
typedef
Superclass::JacobianOfSpatialHessianType 
JacobianOfSpatialHessianType
typedef
Superclass::JacobianOfSpatialJacobianType 
JacobianOfSpatialJacobianType
typedef Superclass::MeasureType MeasureType
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
typedef
Superclass::MovingImagePointer 
MovingImagePointer
typedef Superclass::MovingImageType MovingImageType
typedef NeighborhoodIterator
< CoefficientImageType
NeighborhoodIteratorType
typedef NeighborhoodType::SizeType NeighborhoodSizeType
typedef Neighborhood
< ScalarType,
itkGetStaticConstMacro(FixedImageDimension) > 
NeighborhoodType
typedef
NeighborhoodOperatorImageFilter
< CoefficientImageType,
CoefficientImageType
NOIFType
typedef Superclass::OutputPointType OutputPointType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef
NeighborhoodIteratorType::RadiusType 
RadiusType
typedef Superclass::RealType RealType
typedef
RigidityImageType::IndexType 
RigidityImageIndexType
typedef ImageRegionIterator
< RigidityImageType
RigidityImageIteratorType
typedef RigidityImageType::Pointer RigidityImagePointer
typedef
RigidityImageType::PointType 
RigidityImagePointType
typedef
RigidityImageType::RegionType 
RigidityImageRegionType
typedef CoefficientImageType RigidityImageType
typedef
RigidityImageType::PixelType 
RigidityPixelType
typedef Superclass::ScalarType ScalarType
typedef
TransformRigidityPenaltyTerm 
Self
typedef
StructuringElementType::RadiusType 
SERadiusType
typedef
Superclass::SpatialHessianType 
SpatialHessianType
typedef
Superclass::SpatialJacobianType 
SpatialJacobianType
typedef
BinaryBallStructuringElement
< RigidityPixelType,
itkGetStaticConstMacro(FixedImageDimension) > 
StructuringElementType
typedef TransformPenaltyTerm
< MetricBase< TElastix >
::FixedImageType, double
Superclass
typedef
Superclass::TransformJacobianType 
TransformJacobianType
typedef
Superclass::TransformParametersType 
TransformParametersType
typedef
Superclass::TransformPointer 
TransformPointer
typedef Superclass::TransformType TransformType
- Public Types inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass::DerivativeType DerivativeType
typedef
Superclass::DerivativeValueType 
DerivativeValueType
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
typedef
Superclass::FixedImagePointer 
FixedImagePointer
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
typedef Superclass::FixedImageType FixedImageType
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass::GradientImagePointer 
GradientImagePointer
typedef
Superclass::GradientImageType 
GradientImageType
typedef
Superclass::GradientPixelType 
GradientPixelType
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
typedef Superclass::InputPointType InputPointType
typedef
TransformType::InternalMatrixType 
InternalMatrixType
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass::InterpolatorType 
InterpolatorType
typedef
TransformType::JacobianOfSpatialHessianType 
JacobianOfSpatialHessianType
typedef
TransformType::JacobianOfSpatialJacobianType 
JacobianOfSpatialJacobianType
typedef Superclass::MeasureType MeasureType
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
typedef
Superclass::MovingImagePointer 
MovingImagePointer
typedef Superclass::MovingImageType MovingImageType
typedef Superclass::OutputPointType OutputPointType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::RealType RealType
typedef double ScalarType
typedef TransformPenaltyTerm Self
typedef
TransformType::SpatialHessianType 
SpatialHessianType
typedef
TransformType::SpatialJacobianType 
SpatialJacobianType
typedef
AdvancedImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::FixedImageType
Superclass
typedef
Superclass::TransformJacobianType 
TransformJacobianType
typedef
Superclass::TransformParametersType 
TransformParametersType
typedef
Superclass::AdvancedTransformType 
TransformType
- Public Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
typedef AdvancedTransform
< ScalarType,
FixedImageDimension,
MovingImageDimension > 
AdvancedTransformType
typedef SmartPointer< const SelfConstPointer
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
typedef Superclass::DerivativeType DerivativeType
typedef DerivativeType::ValueType DerivativeValueType
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
typedef
FixedImageLimiterType::OutputType 
FixedImageLimiterOutputType
typedef LimiterFunctionBase
< RealType,
FixedImageDimension > 
FixedImageLimiterType
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
typedef FixedImageType::PixelType FixedImagePixelType
typedef FixedImageType::Pointer FixedImagePointer
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
typedef Superclass::FixedImageType FixedImageType
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
typedef
Superclass::GradientImagePointer 
GradientImagePointer
typedef
Superclass::GradientImageType 
GradientImageType
typedef
Superclass::GradientPixelType 
GradientPixelType
typedef vnl_sparse_matrix
< HessianValueType
HessianType
typedef DerivativeType::ValueType HessianValueType
typedef
ImageSamplerType::OutputVectorContainerPointer 
ImageSampleContainerPointer
typedef
ImageSamplerType::OutputVectorContainerType 
ImageSampleContainerType
typedef ImageSamplerType::Pointer ImageSamplerPointer
typedef ImageSamplerBase
< FixedImageType
ImageSamplerType
typedef Superclass::InputPointType InputPointType
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
typedef
Superclass::InterpolatorType 
InterpolatorType
typedef Superclass::MeasureType MeasureType
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
typedef FixedArray< double,
itkGetStaticConstMacro(MovingImageDimension) > 
MovingImageDerivativeScalesType
typedef
MovingImageLimiterType::OutputType 
MovingImageLimiterOutputType
typedef LimiterFunctionBase
< RealType,
MovingImageDimension > 
MovingImageLimiterType
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
typedef MovingImageType::Pointer MovingImagePointer
typedef MovingImageType::RegionType MovingImageRegionType
typedef Superclass::MovingImageType MovingImageType
typedef Superclass::OutputPointType OutputPointType
typedef Superclass::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef Superclass::RealType RealType
typedef TransformType::ScalarType ScalarType
typedef AdvancedImageToImageMetric Self
typedef ImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::FixedImageType
Superclass
typedef
Superclass::TransformJacobianType 
TransformJacobianType
typedef
Superclass::TransformParametersType 
TransformParametersType
typedef
Superclass::TransformPointer 
TransformPointer
typedef Superclass::TransformType TransformType
- Public Types inherited from elastix::MetricBase< TElastix >
typedef
AdvancedImageToImageMetric
< FixedImageType,
MovingImageType
AdvancedMetricType
typedef
Superclass::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass::ConfigurationType 
ConfigurationType
typedef
ITKBaseType::ParametersValueType 
CoordinateRepresentationType
typedef Superclass::ElastixPointer ElastixPointer
typedef Superclass::ElastixType ElastixType
typedef ElastixType::FixedImageType FixedImageType
typedef PointSet
< CoordinateRepresentationType,
FixedImageDimension,
DefaultStaticMeshTraits
< CoordinateRepresentationType,
FixedImageDimension,
FixedImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
FixedPointSetType
typedef FixedImageType::PointType FixedPointType
typedef FixedPointType::ValueType FixedPointValueType
typedef
AdvancedMetricType::ImageSamplerType 
ImageSamplerBaseType
typedef SingleValuedCostFunction ITKBaseType
typedef ITKBaseType::MeasureType MeasureType
typedef
ElastixType::MovingImageType 
MovingImageType
typedef PointSet
< CoordinateRepresentationType,
MovingImageDimension,
DefaultStaticMeshTraits
< CoordinateRepresentationType,
MovingImageDimension,
MovingImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
MovingPointSetType
typedef MovingImageType::PointType MovingPointType
typedef MovingPointType::ValueType MovingPointValueType
typedef
Superclass::RegistrationPointer 
RegistrationPointer
typedef
Superclass::RegistrationType 
RegistrationType
typedef MetricBase Self
typedef BaseComponentSE< TElastix > Superclass
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef
ElastixType::ConfigurationPointer 
ConfigurationPointer
typedef
ElastixType::ConfigurationType 
ConfigurationType
typedef ElastixType::Pointer ElastixPointer
typedef TElastix ElastixType
typedef RegistrationTypeRegistrationPointer
typedef
ElastixType::RegistrationBaseType 
RegistrationType
typedef BaseComponentSE Self
typedef BaseComponent Superclass

Public Member Functions

virtual void AfterEachIteration (void)
virtual void BeforeEachResolution (void)
virtual void BeforeRegistration (void)
 elxClassNameMacro ("TransformRigidityPenalty")
virtual const char * GetClassName () const
virtual void Initialize (void) throw (ExceptionObject)
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void SelectNewSamples (void)
- Public Member Functions inherited from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
void CheckUseAndCalculationBooleans (void)
void FillRigidityCoefficientImage (const ParametersType &parameters) const
virtual void GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const
virtual const MeasureTypeGetLinearityConditionGradientMagnitude ()
virtual const MeasureTypeGetLinearityConditionValue ()
virtual ScalarType GetLinearityConditionWeight ()
virtual const MeasureTypeGetOrthonormalityConditionGradientMagnitude ()
virtual const MeasureTypeGetOrthonormalityConditionValue ()
virtual ScalarType GetOrthonormalityConditionWeight ()
virtual const MeasureTypeGetPropernessConditionGradientMagnitude ()
virtual const MeasureTypeGetPropernessConditionValue ()
virtual ScalarType GetPropernessConditionWeight ()
virtual MeasureType GetValue (const ParametersType &parameters) const
virtual void GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
 itkStaticConstMacro (MovingImageDimension, unsigned int, FixedImageType::ImageDimension)
 itkStaticConstMacro (ImageDimension, unsigned int, FixedImageType::ImageDimension)
virtual void SetBSplineTransform (BSplineTransformType *_arg)
virtual void SetCalculateLinearityCondition (bool _arg)
virtual void SetCalculateOrthonormalityCondition (bool _arg)
virtual void SetCalculatePropernessCondition (bool _arg)
virtual void SetDilateRigidityImages (bool _arg)
virtual void SetDilationRadiusMultiplier (CoordinateRepresentationType _arg)
virtual void SetFixedRigidityImage (RigidityImageType *_arg)
virtual void SetLinearityConditionWeight (ScalarType _arg)
virtual void SetMovingRigidityImage (RigidityImageType *_arg)
virtual void SetOrthonormalityConditionWeight (ScalarType _arg)
virtual void SetPropernessConditionWeight (ScalarType _arg)
virtual void SetUseFixedRigidityImage (bool _arg)
virtual void SetUseLinearityCondition (bool _arg)
virtual void SetUseMovingRigidityImage (bool _arg)
virtual void SetUseOrthonormalityCondition (bool _arg)
virtual void SetUsePropernessCondition (bool _arg)
- Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void AfterEachIterationBase (void)
virtual void BeforeEachResolutionBase (void)
virtual ImageSamplerBaseTypeGetAdvancedMetricImageSampler (void) const
virtual bool GetAdvancedMetricUseImageSampler (void) const
virtual ITKBaseTypeGetAsITKBaseType (void)
virtual const ITKBaseTypeGetAsITKBaseType (void) const
virtual MeasureType GetCurrentExactMetricValue (void) const
virtual bool GetShowExactMetricValue (void) const
virtual void SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
virtual ElastixTypeGetElastix (void) const
virtual RegistrationPointer GetRegistration (void) const
virtual void SetConfiguration (ConfigurationType *_arg)
virtual void SetElastix (ElastixType *_arg)
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachResolution (void)
virtual void AfterEachResolutionBase (void)
virtual void AfterRegistration (void)
virtual void AfterRegistrationBase (void)
virtual int BeforeAll (void)
virtual int BeforeAllBase (void)
virtual void BeforeRegistrationBase (void)
virtual const char * elxGetClassName (void) const
virtual const char * GetComponentLabel (void) const
virtual void SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions

static Pointer New ()

Protected Member Functions

 TransformRigidityPenalty ()
virtual ~TransformRigidityPenalty ()
- Protected Member Functions inherited from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
void PrintSelf (std::ostream &os, Indent indent) const
 TransformRigidityPenaltyTerm ()
virtual ~TransformRigidityPenaltyTerm ()
- Protected Member Functions inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
virtual bool CheckForBSplineTransform (BSplineTransformPointer &bspline) const
 TransformPenaltyTerm ()
virtual ~TransformPenaltyTerm ()
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
 AdvancedImageToImageMetric ()
virtual void CheckForAdvancedTransform (void)
virtual void CheckForBSplineInterpolator (void)
virtual void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
virtual void ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType &region)
virtual void ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType &region)
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
virtual bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
virtual void InitializeImageSampler (void) throw ( ExceptionObject )
virtual void InitializeLimiters (void)
virtual bool IsInsideMovingMask (const MovingImagePointType &point) const
virtual void SetUseFixedImageLimiter (bool _arg)
virtual void SetUseImageSampler (bool _arg)
virtual void SetUseMovingImageLimiter (bool _arg)
virtual bool TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
virtual ~AdvancedImageToImageMetric ()
- Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType GetExactValue (const ParametersType &parameters)
 MetricBase ()
virtual ~MetricBase ()
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
virtual ~BaseComponentSE ()
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
virtual ~BaseComponent ()

Private Member Functions

void operator= (const Self &)
 TransformRigidityPenalty (const Self &)

Additional Inherited Members

- Protected Types inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef
BSplineTransformType::Pointer 
BSplineTransformPointer
typedef
AdvancedBSplineDeformableTransform
< ScalarType,
FixedImageDimension, 3 > 
BSplineTransformType
typedef
AdvancedCombinationTransform
< ScalarType,
FixedImageDimension > 
CombinationTransformType
typedef
Superclass::FixedImageIndexType 
FixedImageIndexType
typedef
Superclass::FixedImageIndexValueType 
FixedImageIndexValueType
typedef
Superclass::FixedImagePointType 
FixedImagePointType
typedef
Superclass::MovingImageContinuousIndexType 
MovingImageContinuousIndexType
typedef
Superclass::MovingImageIndexType 
MovingImageIndexType
typedef
Superclass::MovingImagePointType 
MovingImagePointType
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
- Protected Types inherited from elastix::MetricBase< TElastix >
typedef itk::ImageGridSampler
< FixedImageType
ExactMetricImageSamplerType
typedef
ExactMetricImageSamplerType::SampleGridSpacingType 
ExactMetricSampleGridSpacingType
typedef ITKBaseType::ParametersType ParametersType
- Protected Attributes inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
AdvancedTransformType::Pointer m_AdvancedTransform
BSplineInterpolatorType::Pointer m_BSplineInterpolator
BSplineInterpolatorFloatType::Pointer m_BSplineInterpolatorFloat
CentralDifferenceGradientFilterType::Pointer m_CentralDifferenceGradientFilter
FixedImageLimiterType::Pointer m_FixedImageLimiter
FixedImageLimiterOutputType m_FixedImageMaxLimit
FixedImageLimiterOutputType m_FixedImageMinLimit
FixedImagePixelType m_FixedImageTrueMax
FixedImagePixelType m_FixedImageTrueMin
ImageSamplerPointer m_ImageSampler
bool m_InterpolatorIsBSpline
bool m_InterpolatorIsBSplineFloat
bool m_InterpolatorIsReducedBSpline
MovingImageLimiterType::Pointer m_MovingImageLimiter
MovingImageLimiterOutputType m_MovingImageMaxLimit
MovingImageLimiterOutputType m_MovingImageMinLimit
MovingImagePixelType m_MovingImageTrueMax
MovingImagePixelType m_MovingImageTrueMin
ReducedBSplineInterpolatorType::Pointer m_ReducedBSplineInterpolator
bool m_TransformIsAdvanced
- Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType m_CurrentExactMetricValue
ExactMetricSampleGridSpacingType m_ExactMetricSampleGridSpacing
ExactMetricImageSamplerType::Pointer m_ExactMetricSampler
bool m_ShowExactMetricValue

Detailed Description

template<class TElastix>
class elastix::TransformRigidityPenalty< TElastix >

A penalty term based on non-rigidity.

For more information check the paper:
M. Staring, S. Klein and J.P.W. Pluim, "A Rigidity Penalty Term for Nonrigid Registration," Medical Physics, vol. 34, no. 11, pp. 4098 - 4108, November 2007.

The parameters used in this class are:

Parameters:
Metric: Select this metric as follows:
(Metric "TransformRigidityPenalty")
Parameters:
LinearityConditionWeight: A parameter to weigh the linearity condition term of the rigidity term.
example: (LinearityConditionWeight 2.0)
Default is 1.0.
Parameters:
OrthonormalityConditionWeight: A parameter to weigh the orthonormality condition term of the rigidity term.
example: (OrthonormalityConditionWeight 2.0)
Default is 1.0.
Parameters:
PropernessConditionWeight: A parameter to weigh the properness condition term of the rigidity term.
example: (PropernessConditionWeight 2.0)
Default is 1.0.
Parameters:
UseLinearityCondition: A flag to specify the usage of the linearity condition term for optimisation.
example: (UseLinearityCondition "false")
Default is "true".
Parameters:
UseOrthonormalityCondition: A flag to specify the usage of the orthonormality condition term for optimisation.
example: (UseOrthonormalityCondition "false")
Default is "true".
Parameters:
UsePropernessCondition: A flag to specify the usage of the properness condition term for optimisation.
example: (UsePropernessCondition "false")
Default is "true".
Parameters:
CalculateLinearityCondition: A flag to specify if the linearity condition should still be calculated, even if it is not used for optimisation.
example: (CalculateLinearityCondition "false")
Default is "true".
Parameters:
CalculateOrthonormalityCondition: A flag to specify if the orthonormality condition should still be calculated, even if it is not used for optimisation.
example: (CalculateOrthonormalityCondition "false")
Default is "true".
Parameters:
CalculatePropernessCondition: A flag to specify if the properness condition should still be calculated, even if it is not used for optimisation.
example: (CalculatePropernessCondition "false")
Default is "true".
Parameters:
FixedRigidityImageName: the name of a coefficient image to specify the rigidity index of voxels in the fixed image.
example: (FixedRigidityImageName "fixedRigidityImage.mhd")
If not supplied the rigidity coefficient is not based on the fixed image, which is recommended.
If neither FixedRigidityImageName nor MovingRigidityImageName are supplied, the rigidity penalty term is evaluated on the whole transform input domain.
Parameters:
MovingRigidityImageName: the name of a coefficient image to specify the rigidity index of voxels in the moving image.
example: (MovingRigidityImageName "movingRigidityImage.mhd")
If not supplied the rigidity coefficient is not based on the moving image, which is NOT recommended.
If neither FixedRigidityImageName nor MovingRigidityImageName are supplied, the rigidity penalty term is evaluated on the whole transform input domain.
Parameters:
DilateRigidityImages: flag to specify the dilation of the rigidity coefficient images. With this the region of rigidity can be extended to force rigidity of the inner region.
example: (DilateRigidityImages "false" "false" "true")
Default is "true".
Parameters:
DilationRadiusMultiplier: the dilation radius is a multiplier times the grid spacing of the B-spline transform.
example: (DilationRadiusMultiplier 1.0 1.0 2.0)
Default is 1.0.

Definition at line 109 of file elxTransformRigidityPenaltyTerm.h.

Member Typedef Documentation

Definition at line 178 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 192 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 191 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef SmartPointer<const Self> elastix::TransformRigidityPenalty< TElastix >::ConstPointer

Definition at line 124 of file elxTransformRigidityPenaltyTerm.h.

Typedefs from the superclass.

Definition at line 139 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::DerivativeType elastix::TransformRigidityPenalty< TElastix >::DerivativeType

Definition at line 165 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass2::ElastixPointer elastix::TransformRigidityPenalty< TElastix >::ElastixPointer

Definition at line 190 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass2::ElastixType elastix::TransformRigidityPenalty< TElastix >::ElastixType

Typedef's inherited from elastix.

Definition at line 189 of file elxTransformRigidityPenaltyTerm.h.

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Definition at line 145 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::FixedImageType elastix::TransformRigidityPenalty< TElastix >::FixedImageType

Definition at line 143 of file elxTransformRigidityPenaltyTerm.h.

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template<class TElastix >
typedef Superclass1::InputPointType elastix::TransformRigidityPenalty< TElastix >::InputPointType

Definition at line 148 of file elxTransformRigidityPenaltyTerm.h.

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Definition at line 152 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass2::ITKBaseType elastix::TransformRigidityPenalty< TElastix >::ITKBaseType

Definition at line 195 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::MeasureType elastix::TransformRigidityPenalty< TElastix >::MeasureType

Definition at line 164 of file elxTransformRigidityPenaltyTerm.h.

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template<class TElastix >
typedef Superclass1::MovingImageType elastix::TransformRigidityPenalty< TElastix >::MovingImageType

Definition at line 140 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::OutputPointType elastix::TransformRigidityPenalty< TElastix >::OutputPointType

Definition at line 149 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::ParametersType elastix::TransformRigidityPenalty< TElastix >::ParametersType

Definition at line 166 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef SmartPointer<Self> elastix::TransformRigidityPenalty< TElastix >::Pointer

Definition at line 123 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::RealType elastix::TransformRigidityPenalty< TElastix >::RealType

Definition at line 154 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 194 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 193 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef TransformRigidityPenalty elastix::TransformRigidityPenalty< TElastix >::Self

Standard ITK-stuff.

Definition at line 118 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef TransformRigidityPenaltyTerm< typename MetricBase<TElastix>::FixedImageType, double > elastix::TransformRigidityPenalty< TElastix >::Superclass1

Definition at line 121 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef MetricBase<TElastix> elastix::TransformRigidityPenalty< TElastix >::Superclass2

Definition at line 122 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef TimerType::Pointer elastix::TransformRigidityPenalty< TElastix >::TimerPointer

Typedef for timer.

Definition at line 200 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef tmr::Timer elastix::TransformRigidityPenalty< TElastix >::TimerType

Typedef for timer.

Definition at line 198 of file elxTransformRigidityPenaltyTerm.h.

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Definition at line 147 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::TransformType elastix::TransformRigidityPenalty< TElastix >::TransformType

Definition at line 146 of file elxTransformRigidityPenaltyTerm.h.

Constructor & Destructor Documentation

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::TransformRigidityPenalty ( )
inlineprotected

The constructor.

Definition at line 236 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
virtual elastix::TransformRigidityPenalty< TElastix >::~TransformRigidityPenalty ( )
inlineprotectedvirtual

The destructor.

Definition at line 239 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::TransformRigidityPenalty ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::AfterEachIteration ( void  )
virtual

Do some things after each iteration:

  • Print the OC, PC, LC parts of the rigidity term.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::BeforeEachResolution ( void  )
virtual

Do some things before each resolution:

  • Read all parameters.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::BeforeRegistration ( void  )
virtual

Do some things before registration:

  • Read the fixed rigidity image.
  • Read the moving rigidity image.
  • Setup some extra target cells.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::elxClassNameMacro ( "TransformRigidityPenalty< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "TransformRigidityPenalty")

template<class TElastix >
virtual const char* elastix::TransformRigidityPenalty< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::Initialize ( void  ) throw (ExceptionObject)
virtual

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

Reimplemented from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >.

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension.

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)

The moving image dimension.

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
static Pointer elastix::TransformRigidityPenalty< TElastix >::New ( )
static

Method for creation through the object factory.

Reimplemented from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >.

template<class TElastix >
void elastix::TransformRigidityPenalty< TElastix >::operator= ( const Self )
private

The private copy constructor.

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::SelectNewSamples ( void  )
inlinevirtual

This metric is advanced (so it has a sampling possibility), but it purposely does not use samplers. The MetricBase class, however, issues a warning if this is the case, so we overwrite that function.

Reimplemented from elastix::MetricBase< TElastix >.

Definition at line 231 of file elxTransformRigidityPenaltyTerm.h.



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