Description: Create upstream changelog (extracted from README)
Author: Thorsten Alteholz <debian@alteholz.de>
Last-Update: 2011-06-03
Index: dotur-1.53/changelog
===================================================================
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+++ dotur-1.53/changelog 2011-06-03 12:55:46.000000000 +0200
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+Version 1.0
+   Released May 25, 2004
+Version 1.1
+   Released July 19, 2004
+     Fixed bug in shannon index files
+     expanded number of values to the right of the decimal point from 2 to 4
+Version 1.2
+   Released August 23, 2004
+     Fixed bug in calculating variance of shannon index
+     Give user the flexibility to set the number of iterations to run
+     Reverted to presenting the mean instead of 50%tile for rarefaction curve
+     Fixed a small bug that had rarefaction curves going through (1,0) instead of (1,1)
+     Changed *.r_rarefaction filename to *.rarefaction
+     Changed *.r_*.ltt to *.ltt filenames (eg. *r_chao.ltt is now *.chao.ltt)
+     Wrote first version of user manual
+Version 1.3
+   Released March 3, 2005
+     Final release before publication of paper in March 2005 issue of AEM
+     Fixed libraries dependency error that caused compilation problems on some platforms
+     Fixed core dump error received by some users
+     Fixed bugs in reporting Shannon & Simpson Indices
+     Changed number of places to report right of the decimal point for output files
+     Streamlined terminal output
+     Added user control of whether to calculate rarefaction curve for ecological parameters
+     (still calcuates traditional rarefaction curve) - makes execution much faster
+     Fixed some problems and updated parts of user manual
+Version 1.4
+   Released March 8, 2005
+     Fixed bug in calculating the confidence interval for the Chao1 estimator
+Version 1.5
+   Released April 19, 2005
+     Added 95% CI for ACE richness estimator
+     Updated bias-corrected Chao1 richness estimator and standard error formulae according to Colwell and Chao
+     Allow user to set largest distance to consider (-stop)
+     Allow user to construct a rarefaction curve obtained by sampling with replacement (-wrep)
+     Fixed a problem in constructing collector's curves caused by sequence names that are a fragment of another name
+Version 1.51
+   Released April 22, 2005
+     Support mega3 formatted distance files as input
+Version 1.53
+   Released November XX, 2005
+     Allow user to "jumble" the order of sequences in the distance matrix (use -jumble)
+     Allow the user to input a similarity matrix, although correction is still recommended (use -sim)
+     Modified data types in otu.h making the clustering procedure use less memory and faster
+     DOTUR now produces a file containing data to construct rank-abundance plots     

